Variant report

Variant	rs1207439
Chromosome Location	chr2:206184330-206184331
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11686273	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2541155	1.00[ASN][1000 genomes]
rs849191	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012780	chr2:206124954-206546271	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:206168600-206190600	Weak transcription	Fetal Intestine Large	intestine
2	chr2:206171000-206186200	Weak transcription	HSMMtube	muscle
3	chr2:206171000-206190200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr2:206172600-206185400	Weak transcription	HSMM	muscle
5	chr2:206178600-206186200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr2:206179800-206185200	Weak transcription	Fetal Heart	heart
7	chr2:206180800-206188200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr2:206182400-206187000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr2:206183400-206184400	ZNF genes & repeats	Aorta	Aorta
10	chr2:206184000-206185600	Weak transcription	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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