Variant report

Variant	rs849191
Chromosome Location	chr2:206187045-206187046
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10179357	0.82[AMR][1000 genomes]
rs11686273	1.00[ASN][1000 genomes]
rs1207413	0.90[EUR][1000 genomes]
rs1207439	1.00[ASN][1000 genomes]
rs1877344	0.82[AMR][1000 genomes]
rs1877345	0.82[AMR][1000 genomes]
rs2541155	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2668152	0.82[AMR][1000 genomes]
rs6751914	0.82[AMR][1000 genomes]
rs698911	0.82[AMR][1000 genomes]
rs849192	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs849213	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs849225	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012780	chr2:206124954-206546271	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:206168600-206190600	Weak transcription	Fetal Intestine Large	intestine
2	chr2:206171000-206190200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr2:206180800-206188200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr2:206186400-206188000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr2:206186800-206217400	Weak transcription	HSMM	muscle
6	chr2:206187000-206187200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links