Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11897011	1.00[ASN][1000 genomes]
rs1207425	0.82[LWK][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes]
rs1207427	0.83[AMR][1000 genomes]
rs13389747	1.00[ASN][1000 genomes]
rs13409214	1.00[ASN][1000 genomes]
rs13409417	1.00[ASN][1000 genomes]
rs16837235	1.00[ASN][1000 genomes]
rs2001527	1.00[ASN][1000 genomes]
rs2137177	1.00[ASN][1000 genomes]
rs2541155	0.91[EUR][1000 genomes]
rs28582277	1.00[ASN][1000 genomes]
rs59617257	1.00[ASN][1000 genomes]
rs59629925	1.00[ASN][1000 genomes]
rs6745571	1.00[ASN][1000 genomes]
rs6760161	1.00[ASN][1000 genomes]
rs73055947	1.00[ASN][1000 genomes]
rs73055953	1.00[ASN][1000 genomes]
rs73058323	1.00[ASN][1000 genomes]
rs7591617	1.00[ASN][1000 genomes]
rs849122	1.00[ASN][1000 genomes]
rs849191	0.90[EUR][1000 genomes]
rs849192	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs849196	1.00[ASN][1000 genomes]
rs849204	1.00[ASN][1000 genomes]
rs849205	1.00[ASN][1000 genomes]
rs849212	1.00[ASN][1000 genomes]
rs849213	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs849225	0.92[EUR][1000 genomes]
rs849268	1.00[ASN][1000 genomes]
rs861066	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1012780	chr2:206124954-206546271	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:206161200-206177000	Weak transcription	Colon Smooth Muscle	Colon
2	chr2:206163800-206177200	Weak transcription	Fetal Lung	lung
3	chr2:206165200-206171000	Weak transcription	Left Ventricle	heart
4	chr2:206165600-206177200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr2:206166600-206171600	Weak transcription	Liver	Liver
6	chr2:206167600-206172400	Weak transcription	Fetal Muscle Trunk	muscle
7	chr2:206168600-206172400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr2:206168600-206173400	Weak transcription	Ovary	ovary
9	chr2:206168600-206190600	Weak transcription	Fetal Intestine Large	intestine
10	chr2:206168800-206171400	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr2:206168800-206176200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr2:206169800-206171000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr2:206170400-206171000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
14	chr2:206170600-206171000	ZNF genes & repeats	HSMMtube	muscle
15	chr2:206170800-206171000	ZNF genes & repeats	Aorta	Aorta
16	chr2:206170800-206171000	Enhancers	Pancreas	Pancrea

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