Variant report

Variant	rs59617257
Chromosome Location	chr2:206156117-206156118
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11897011	1.00[ASN][1000 genomes]
rs1207413	1.00[ASN][1000 genomes]
rs13389747	1.00[ASN][1000 genomes]
rs13409214	1.00[ASN][1000 genomes]
rs13409417	1.00[ASN][1000 genomes]
rs16837235	1.00[ASN][1000 genomes]
rs2001527	1.00[ASN][1000 genomes]
rs2137177	1.00[ASN][1000 genomes]
rs28582277	1.00[ASN][1000 genomes]
rs59629925	1.00[ASN][1000 genomes]
rs6745571	1.00[ASN][1000 genomes]
rs6760161	1.00[ASN][1000 genomes]
rs73055947	1.00[ASN][1000 genomes]
rs73055953	1.00[ASN][1000 genomes]
rs73058323	1.00[ASN][1000 genomes]
rs7591617	1.00[ASN][1000 genomes]
rs849122	1.00[ASN][1000 genomes]
rs849192	1.00[ASN][1000 genomes]
rs849196	1.00[ASN][1000 genomes]
rs849204	1.00[ASN][1000 genomes]
rs849205	1.00[ASN][1000 genomes]
rs849212	1.00[ASN][1000 genomes]
rs849213	1.00[ASN][1000 genomes]
rs849268	1.00[ASN][1000 genomes]
rs861066	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1012780	chr2:206124954-206546271	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:206097200-206170600	Weak transcription	HSMMtube	muscle
2	chr2:206118200-206156600	Weak transcription	Aorta	Aorta
3	chr2:206138800-206162200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr2:206149000-206156800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:206149400-206158200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr2:206149400-206160000	Weak transcription	Psoas Muscle	Psoas
7	chr2:206149600-206158200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr2:206153000-206165800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr2:206154200-206168200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr2:206154600-206165800	Weak transcription	Ovary	ovary
11	chr2:206155200-206158200	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr2:206155400-206156200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr2:206155400-206158400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr2:206155800-206156600	Weak transcription	Fetal Intestine Small	intestine
15	chr2:206156000-206156600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr2:206156000-206161000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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