Variant report
| Variant | rs28582277 |
|---|---|
| Chromosome Location | chr2:206246612-206246613 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs11897011 | 1.00[ASN][1000 genomes] |
| rs1207413 | 1.00[ASN][1000 genomes] |
| rs13389747 | 1.00[ASN][1000 genomes] |
| rs13409214 | 0.81[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13409417 | 0.81[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16837235 | 1.00[ASN][1000 genomes] |
| rs2001527 | 0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2137177 | 1.00[ASN][1000 genomes] |
| rs59617257 | 1.00[ASN][1000 genomes] |
| rs59629925 | 1.00[ASN][1000 genomes] |
| rs6745571 | 1.00[ASN][1000 genomes] |
| rs6760161 | 1.00[ASN][1000 genomes] |
| rs73055947 | 1.00[ASN][1000 genomes] |
| rs73055953 | 1.00[ASN][1000 genomes] |
| rs73058323 | 1.00[ASN][1000 genomes] |
| rs7591617 | 1.00[ASN][1000 genomes] |
| rs849192 | 1.00[ASN][1000 genomes] |
| rs849196 | 1.00[ASN][1000 genomes] |
| rs849204 | 1.00[ASN][1000 genomes] |
| rs849205 | 1.00[ASN][1000 genomes] |
| rs849212 | 1.00[ASN][1000 genomes] |
| rs849213 | 1.00[ASN][1000 genomes] |
| rs849268 | 1.00[ASN][1000 genomes] |
| rs861066 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1012780 | chr2:206124954-206546271 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv962519 | chr2:206239854-206250466 | Enhancers Flanking Active TSS Weak transcription Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 3 | esv3380658 | chr2:206244107-206247005 | Enhancers | n/a | n/a | inside rSNPs | n/a |
| 4 | esv3441440 | chr2:206244532-206247080 | Enhancers | n/a | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:206246600-206247200 | Enhancers | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
