Variant report

Variant	rs2541155
Chromosome Location	chr2:206195233-206195234
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10179357	0.84[AMR][1000 genomes]
rs11686273	1.00[ASN][1000 genomes]
rs1207413	0.91[EUR][1000 genomes]
rs1207439	1.00[ASN][1000 genomes]
rs1877344	0.84[AMR][1000 genomes]
rs1877345	0.84[AMR][1000 genomes]
rs2668152	0.84[AMR][1000 genomes]
rs6751822	0.81[AMR][1000 genomes]
rs6751914	0.84[AMR][1000 genomes]
rs698911	0.84[AMR][1000 genomes]
rs849191	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs849192	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs849213	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs849225	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012780	chr2:206124954-206546271	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2541155	CRYGC	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:206186800-206217400	Weak transcription	HSMM	muscle
2	chr2:206188800-206199800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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