Variant report

Variant	rs10179357
Chromosome Location	chr2:206232785-206232786
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1877344	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1877345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2541155	0.84[AMR][1000 genomes]
rs2668147	0.82[EUR][1000 genomes]
rs2668152	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2668153	0.96[EUR][1000 genomes]
rs6712196	0.90[EUR][1000 genomes]
rs6751822	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6751914	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs698911	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs849191	0.82[AMR][1000 genomes]
rs849192	0.82[AMR][1000 genomes]
rs849195	0.90[EUR][1000 genomes]
rs849196	0.82[AFR][1000 genomes]
rs849203	0.96[EUR][1000 genomes]
rs849213	0.84[AMR][1000 genomes]
rs849225	0.84[AMR][1000 genomes]
rs849252	0.83[AMR][1000 genomes]
rs861066	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012780	chr2:206124954-206546271	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs10179357	WDR12	cis	cerebellum	SCAN
rs10179357	CRYGC	cis	cerebellum	SCAN
rs10179357	CLEC4G	trans	lymphoblastoid	seeQTL
rs10179357	FAM117B	cis	parietal	SCAN
rs10179357	IL1B	trans	lymphoblastoid	seeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:206197600-206240600	Weak transcription	Aorta	Aorta
2	chr2:206227800-206234000	Weak transcription	Ovary	ovary
3	chr2:206230200-206233000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr2:206230400-206232800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:206231200-206232800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr2:206231400-206232800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr2:206232400-206232800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr2:206232600-206232800	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr2:206232600-206236200	Weak transcription	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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