Variant report

Variant	rs849195
Chromosome Location	chr2:206239094-206239095
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10179357	0.90[EUR][1000 genomes]
rs1877344	0.90[EUR][1000 genomes]
rs1877345	0.90[EUR][1000 genomes]
rs2668147	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2668152	0.90[EUR][1000 genomes]
rs2668153	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6712196	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6751822	0.90[EUR][1000 genomes]
rs6751914	0.90[EUR][1000 genomes]
rs698911	0.88[EUR][1000 genomes]
rs849203	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs849229	0.82[EUR][1000 genomes]
rs849238	0.80[EUR][1000 genomes]
rs849252	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs861066	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012780	chr2:206124954-206546271	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:206197600-206240600	Weak transcription	Aorta	Aorta
2	chr2:206237200-206240000	Weak transcription	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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