Variant report

Variant	rs2668153
Chromosome Location	chr2:206228876-206228877
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10179357	0.96[EUR][1000 genomes]
rs1877344	0.96[EUR][1000 genomes]
rs1877345	0.96[EUR][1000 genomes]
rs2668147	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2668152	0.96[EUR][1000 genomes]
rs6712196	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6751822	0.96[EUR][1000 genomes]
rs6751914	0.96[EUR][1000 genomes]
rs698911	0.94[EUR][1000 genomes]
rs849195	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs849203	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs849252	0.88[AMR][1000 genomes]
rs861066	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012780	chr2:206124954-206546271	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:206197600-206240600	Weak transcription	Aorta	Aorta
2	chr2:206223800-206229000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr2:206224000-206229000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr2:206224000-206231200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr2:206224200-206230200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr2:206226600-206231400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr2:206227000-206230200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr2:206227200-206231400	Weak transcription	NHEK	skin
9	chr2:206227800-206234000	Weak transcription	Ovary	ovary
10	chr2:206228000-206229000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr2:206228200-206231400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr2:206228600-206229200	Enhancers	Fetal Brain Male	brain
13	chr2:206228800-206229000	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr2:206228800-206229200	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr2:206228800-206229400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr2:206228800-206229400	Enhancers	iPS-18 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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