Variant report

Variant	rs2668147
Chromosome Location	chr2:206229664-206229665
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10179357	0.82[EUR][1000 genomes]
rs1877344	0.82[EUR][1000 genomes]
rs1877345	0.82[EUR][1000 genomes]
rs1921806	1.00[ASN][1000 genomes]
rs2668152	0.82[EUR][1000 genomes]
rs2668153	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6712196	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6751822	0.82[EUR][1000 genomes]
rs6751914	0.82[EUR][1000 genomes]
rs698911	0.80[EUR][1000 genomes]
rs849195	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs849203	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs849252	0.88[AMR][1000 genomes]
rs861066	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012780	chr2:206124954-206546271	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:206197600-206240600	Weak transcription	Aorta	Aorta
2	chr2:206224000-206231200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr2:206224200-206230200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr2:206226600-206231400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr2:206227000-206230200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr2:206227200-206231400	Weak transcription	NHEK	skin
7	chr2:206227800-206234000	Weak transcription	Ovary	ovary
8	chr2:206228200-206231400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr2:206229200-206232600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr2:206229400-206232400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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