Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11677344	0.84[EUR][1000 genomes]
rs11677715	0.86[EUR][1000 genomes]
rs11686569	0.92[EUR][1000 genomes]
rs11690400	0.86[EUR][1000 genomes]
rs16837232	0.86[EUR][1000 genomes]
rs16837234	0.86[EUR][1000 genomes]
rs16837235	0.81[EUR][1000 genomes]
rs17199190	0.86[EUR][1000 genomes]
rs17200062	0.86[EUR][1000 genomes]
rs17265864	0.86[EUR][1000 genomes]
rs17266866	0.86[EUR][1000 genomes]
rs1849225	0.86[EUR][1000 genomes]
rs2668147	1.00[ASN][1000 genomes]
rs62171471	0.92[EUR][1000 genomes]
rs62171473	0.86[EUR][1000 genomes]
rs62171474	0.92[EUR][1000 genomes]
rs62171475	0.86[EUR][1000 genomes]
rs62171476	0.92[EUR][1000 genomes]
rs62171477	0.86[EUR][1000 genomes]
rs62171478	0.92[EUR][1000 genomes]
rs62171479	0.92[EUR][1000 genomes]
rs62171481	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62171482	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs62171498	0.86[EUR][1000 genomes]
rs62171499	0.86[EUR][1000 genomes]
rs62171500	0.86[EUR][1000 genomes]
rs62171501	0.86[EUR][1000 genomes]
rs62171502	0.86[EUR][1000 genomes]
rs62171503	0.86[EUR][1000 genomes]
rs62171504	0.86[EUR][1000 genomes]
rs62171505	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1012780	chr2:206124954-206546271	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:206161200-206177000	Weak transcription	Colon Smooth Muscle	Colon
2	chr2:206163800-206177200	Weak transcription	Fetal Lung	lung
3	chr2:206165600-206177200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr2:206168600-206173400	Weak transcription	Ovary	ovary
5	chr2:206168600-206190600	Weak transcription	Fetal Intestine Large	intestine
6	chr2:206168800-206176200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr2:206171000-206183400	Weak transcription	Aorta	Aorta
8	chr2:206171000-206186200	Weak transcription	HSMMtube	muscle
9	chr2:206171000-206190200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr2:206172600-206185400	Weak transcription	HSMM	muscle

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