Variant report

Variant	rs17200062
Chromosome Location	chr2:206189653-206189654
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NRP2-8	chr2:206189491-206191161	ucscGeneNc_uc010fuc_1

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11677344	0.86[EUR][1000 genomes]
rs11677715	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11681498	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11686569	0.94[EUR][1000 genomes]
rs11690400	0.89[EUR][1000 genomes]
rs16837232	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16837234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16837235	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16837248	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17199190	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17265864	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17266866	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1849225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1921806	0.86[EUR][1000 genomes]
rs62171471	0.94[EUR][1000 genomes]
rs62171473	0.89[EUR][1000 genomes]
rs62171474	0.94[EUR][1000 genomes]
rs62171475	0.89[EUR][1000 genomes]
rs62171476	0.94[EUR][1000 genomes]
rs62171477	0.89[EUR][1000 genomes]
rs62171478	0.94[EUR][1000 genomes]
rs62171479	0.94[EUR][1000 genomes]
rs62171481	0.94[EUR][1000 genomes]
rs62171482	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62171498	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62171499	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62171500	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62171501	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62171502	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62171503	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62171504	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62171505	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62171507	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62171518	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62171519	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62171520	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012780	chr2:206124954-206546271	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:206168600-206190600	Weak transcription	Fetal Intestine Large	intestine
2	chr2:206171000-206190200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr2:206186800-206217400	Weak transcription	HSMM	muscle
4	chr2:206187400-206190000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr2:206188800-206199800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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