Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11677715	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11681498	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16837232	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16837234	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16837235	0.84[AMR][1000 genomes]
rs16837248	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17199190	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17200062	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17265864	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17266866	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1849225	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62171482	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62171498	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62171499	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62171500	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62171501	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62171502	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62171503	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62171504	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62171505	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62171507	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62171518	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62171519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012780	chr2:206124954-206546271	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:206197600-206240600	Weak transcription	Aorta	Aorta
2	chr2:206223200-206228800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr2:206223800-206228000	Weak transcription	HSMM	muscle
4	chr2:206223800-206229000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:206224000-206229000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr2:206224000-206231200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr2:206224200-206228600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr2:206224200-206228800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr2:206224200-206230200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr2:206224400-206227800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr2:206224400-206228800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr2:206226600-206231400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr2:206227000-206230200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr2:206227200-206231400	Weak transcription	NHEK	skin
15	chr2:206227400-206228000	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr2:206227600-206227800	Enhancers	Ovary	ovary
17	chr2:206227600-206228200	Enhancers	NHDF-Ad	bronchial

Quick Search: