Variant report

Variant	rs62171482
Chromosome Location	chr2:206179709-206179710
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:206176311..206178033-chr2:206179615..206181550,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11677344	0.86[EUR][1000 genomes]
rs11677715	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11681498	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11686569	0.94[EUR][1000 genomes]
rs11690400	0.89[EUR][1000 genomes]
rs16837232	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16837234	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16837235	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16837248	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17199190	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17200062	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17265864	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17266866	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1849225	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1921806	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs62171471	0.94[EUR][1000 genomes]
rs62171473	0.89[EUR][1000 genomes]
rs62171474	0.94[EUR][1000 genomes]
rs62171475	0.89[EUR][1000 genomes]
rs62171476	0.94[EUR][1000 genomes]
rs62171477	0.89[EUR][1000 genomes]
rs62171478	0.94[EUR][1000 genomes]
rs62171479	0.94[EUR][1000 genomes]
rs62171481	0.89[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs62171498	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62171499	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62171500	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62171501	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62171502	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62171503	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62171504	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62171505	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62171507	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62171518	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62171519	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62171520	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1012780	chr2:206124954-206546271	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:206168600-206190600	Weak transcription	Fetal Intestine Large	intestine
2	chr2:206171000-206183400	Weak transcription	Aorta	Aorta
3	chr2:206171000-206186200	Weak transcription	HSMMtube	muscle
4	chr2:206171000-206190200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:206172600-206185400	Weak transcription	HSMM	muscle
6	chr2:206178600-206186200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr2:206179400-206179800	Enhancers	Fetal Heart	heart
8	chr2:206179600-206183400	Weak transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links