Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11677715	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11681498	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16837232	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16837234	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17199190	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17200062	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17265864	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17266866	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1849225	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62171482	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62171498	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62171499	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62171500	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62171501	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62171502	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62171503	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62171504	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62171505	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62171507	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62171518	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62171519	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62171520	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012780	chr2:206124954-206546271	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:206197600-206240600	Weak transcription	Aorta	Aorta
2	chr2:206224000-206231200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr2:206224200-206230200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr2:206226600-206231400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr2:206227000-206230200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr2:206227200-206231400	Weak transcription	NHEK	skin
7	chr2:206227800-206234000	Weak transcription	Ovary	ovary
8	chr2:206228200-206231400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr2:206228600-206229200	Enhancers	Fetal Brain Male	brain
10	chr2:206228800-206229200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr2:206228800-206229400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr2:206228800-206229400	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr2:206229000-206229200	Enhancers	H1 Cell Line	embryonic stem cell
14	chr2:206229000-206229400	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr2:206229000-206229600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

Quick Search: