Variant report

Variant	rs17265864
Chromosome Location	chr2:206187163-206187164
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11677344	0.86[EUR][1000 genomes]
rs11677715	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11681498	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11686569	0.94[EUR][1000 genomes]
rs11690400	0.89[EUR][1000 genomes]
rs16837232	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16837234	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16837235	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16837248	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17199190	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17200062	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17266866	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1849225	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1921806	0.86[EUR][1000 genomes]
rs62171471	0.94[EUR][1000 genomes]
rs62171473	0.89[EUR][1000 genomes]
rs62171474	0.94[EUR][1000 genomes]
rs62171475	0.89[EUR][1000 genomes]
rs62171476	0.94[EUR][1000 genomes]
rs62171477	0.89[EUR][1000 genomes]
rs62171478	0.94[EUR][1000 genomes]
rs62171479	0.94[EUR][1000 genomes]
rs62171481	0.94[EUR][1000 genomes]
rs62171482	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62171498	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62171499	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62171500	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62171501	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62171502	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62171503	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62171504	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62171505	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62171507	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62171518	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62171519	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62171520	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012780	chr2:206124954-206546271	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:206168600-206190600	Weak transcription	Fetal Intestine Large	intestine
2	chr2:206171000-206190200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr2:206180800-206188200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr2:206186400-206188000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr2:206186800-206217400	Weak transcription	HSMM	muscle
6	chr2:206187000-206187200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links