Variant report

Variant	rs12077235
Chromosome Location	chr1:56288116-56288117
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10493186	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12059833	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17112883	0.85[AMR][1000 genomes]
rs17112932	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3935995	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4634949	0.89[AMR][1000 genomes]
rs6588574	0.89[AMR][1000 genomes]
rs6658094	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6662150	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6700187	0.89[AMR][1000 genomes]
rs7531257	0.97[ASN][1000 genomes]
rs7534001	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829926	chr1:56188492-56360745	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a
2	nsv1002958	chr1:56278696-56295112	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56280000-56288600	Weak transcription	NHLF	lung
2	chr1:56280400-56291000	Weak transcription	Colon Smooth Muscle	Colon
3	chr1:56283000-56293000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr1:56283200-56292400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:56284800-56288200	Weak transcription	Placenta	Placenta
6	chr1:56286800-56290200	Enhancers	Placenta Amnion	Placenta Amnion
7	chr1:56287200-56288600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr1:56287800-56290600	Weak transcription	Fetal Kidney	kidney
9	chr1:56287800-56291000	Enhancers	Fetal Intestine Large	intestine
10	chr1:56288000-56290200	Enhancers	Fetal Intestine Small	intestine
11	chr1:56288000-56292000	Enhancers	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links