Variant report

Variant	rs4634949
Chromosome Location	chr1:56287089-56287090
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10158252	0.91[ASN][1000 genomes]
rs10789008	0.89[ASN][1000 genomes]
rs12034199	0.91[ASN][1000 genomes]
rs12059833	0.89[AMR][1000 genomes]
rs12077235	0.89[AMR][1000 genomes]
rs17112883	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3922837	0.91[ASN][1000 genomes]
rs3935995	0.89[AMR][1000 genomes]
rs4244651	0.91[ASN][1000 genomes]
rs4294458	0.91[ASN][1000 genomes]
rs4517390	0.91[ASN][1000 genomes]
rs4927272	0.91[ASN][1000 genomes]
rs6588574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6588576	0.92[ASN][1000 genomes]
rs6658094	0.89[AMR][1000 genomes]
rs6660791	0.91[ASN][1000 genomes]
rs6700187	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7534001	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9326038	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829926	chr1:56188492-56360745	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a
2	nsv1002958	chr1:56278696-56295112	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56280000-56288600	Weak transcription	NHLF	lung
2	chr1:56280400-56291000	Weak transcription	Colon Smooth Muscle	Colon
3	chr1:56282400-56287200	Weak transcription	Adipose Nuclei	Adipose
4	chr1:56282800-56287800	Weak transcription	Fetal Intestine Large	intestine
5	chr1:56283000-56293000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr1:56283200-56292400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:56284800-56288200	Weak transcription	Placenta	Placenta
8	chr1:56285000-56288000	Weak transcription	Fetal Lung	lung
9	chr1:56286800-56287800	Enhancers	Fetal Kidney	kidney
10	chr1:56286800-56290200	Enhancers	Placenta Amnion	Placenta Amnion
11	chr1:56287000-56287200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr1:56287000-56287200	Enhancers	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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