Variant report

Variant	rs7534001
Chromosome Location	chr1:56315800-56315801
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10158252	0.97[ASN][1000 genomes]
rs10789008	0.95[ASN][1000 genomes]
rs12034199	0.97[ASN][1000 genomes]
rs12059833	0.89[AMR][1000 genomes]
rs12077235	0.89[AMR][1000 genomes]
rs17112883	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3922837	0.97[ASN][1000 genomes]
rs3935995	0.89[AMR][1000 genomes]
rs4244651	0.97[ASN][1000 genomes]
rs4294458	0.97[ASN][1000 genomes]
rs4517390	0.97[ASN][1000 genomes]
rs4634949	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4927272	0.97[ASN][1000 genomes]
rs6588574	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6588576	0.95[ASN][1000 genomes]
rs6658094	0.89[AMR][1000 genomes]
rs6660791	0.97[ASN][1000 genomes]
rs6700187	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9326038	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829926	chr1:56188492-56360745	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56295200-56320400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr1:56310400-56321200	Weak transcription	Psoas Muscle	Psoas
3	chr1:56314200-56315800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:56314600-56320000	Weak transcription	NHDF-Ad	bronchial
5	chr1:56315000-56317200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr1:56315000-56319400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:56315000-56323200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr1:56315800-56316600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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