Variant report

Variant	rs12077686
Chromosome Location	chr1:190115829-190115830
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10800940	1.00[AMR][1000 genomes]
rs10920641	0.93[YRI][hapmap]
rs10920656	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10920657	0.91[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10920664	1.00[AMR][1000 genomes]
rs10920667	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs10920685	1.00[AMR][1000 genomes]
rs10920695	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs10920698	0.85[YRI][hapmap]
rs10920699	0.85[YRI][hapmap]
rs10920701	0.83[YRI][hapmap]
rs12060718	1.00[YRI][hapmap]
rs12061471	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12063934	0.92[YRI][hapmap]
rs12067650	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12069314	0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs12074400	1.00[AMR][1000 genomes]
rs12079649	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12080072	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12082166	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12083780	0.92[YRI][hapmap]
rs12084750	0.92[YRI][hapmap]
rs12084800	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12086633	1.00[AMR][1000 genomes]
rs12087388	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12088760	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12090663	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs12090807	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12091719	0.83[YRI][hapmap]
rs12096195	1.00[AMR][1000 genomes]
rs12097847	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16832207	0.87[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868954	chr1:189605447-190135265	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv548532	chr1:189758772-190371671	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv917005	chr1:189855484-190259380	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv832104	chr1:189990148-190186708	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv932040	chr1:190005334-190914580	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv548549	chr1:190063211-190116362	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv548550	chr1:190064165-190116362	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv872753	chr1:190064165-190135811	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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