Variant report

Variant	rs12082166
Chromosome Location	chr1:190134427-190134428
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10800940	1.00[AMR][1000 genomes]
rs10920656	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10920657	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10920664	1.00[AMR][1000 genomes]
rs10920667	1.00[AMR][1000 genomes]
rs10920685	1.00[AMR][1000 genomes]
rs10920695	1.00[AMR][1000 genomes]
rs12061471	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12067650	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12069314	1.00[AMR][1000 genomes]
rs12074400	1.00[AMR][1000 genomes]
rs12079649	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12080072	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12080920	1.00[AMR][1000 genomes]
rs12084800	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12086633	1.00[AMR][1000 genomes]
rs12087388	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12088760	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12090663	1.00[AMR][1000 genomes]
rs12090807	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12093281	1.00[AMR][1000 genomes]
rs12096195	1.00[AMR][1000 genomes]
rs12097847	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16832207	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868954	chr1:189605447-190135265	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv548532	chr1:189758772-190371671	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv917005	chr1:189855484-190259380	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv832104	chr1:189990148-190186708	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv932040	chr1:190005334-190914580	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv872753	chr1:190064165-190135811	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	esv2764208	chr1:190123195-190143205	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv1003035	chr1:190123195-190291554	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv945323	chr1:190130129-190134812	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:190132400-190136800	Weak transcription	Muscle Satellite Cultured Cells	--

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