Variant report
| Variant | rs12093281 |
|---|---|
| Chromosome Location | chr1:190337878-190337879 |
| allele | A/C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs10800940 | 1.00[AMR][1000 genomes] |
| rs10920656 | 1.00[AMR][1000 genomes] |
| rs10920657 | 0.82[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs10920664 | 1.00[AMR][1000 genomes] |
| rs10920667 | 1.00[AMR][1000 genomes] |
| rs10920685 | 1.00[AMR][1000 genomes] |
| rs10920695 | 0.92[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10920698 | 0.92[YRI][hapmap] |
| rs10920699 | 0.92[YRI][hapmap] |
| rs10920701 | 0.91[YRI][hapmap] |
| rs12061471 | 1.00[AMR][1000 genomes] |
| rs12062310 | 1.00[AMR][1000 genomes] |
| rs12067650 | 1.00[AMR][1000 genomes] |
| rs12069314 | 1.00[AMR][1000 genomes] |
| rs12070897 | 0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12074400 | 1.00[AMR][1000 genomes] |
| rs12078989 | 1.00[AMR][1000 genomes] |
| rs12079649 | 1.00[AMR][1000 genomes] |
| rs12080072 | 1.00[AMR][1000 genomes] |
| rs12080920 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12082166 | 1.00[AMR][1000 genomes] |
| rs12083780 | 0.83[YRI][hapmap] |
| rs12084750 | 0.84[YRI][hapmap] |
| rs12084800 | 1.00[AMR][1000 genomes] |
| rs12086633 | 1.00[AMR][1000 genomes] |
| rs12087388 | 1.00[AMR][1000 genomes] |
| rs12088760 | 1.00[AMR][1000 genomes] |
| rs12090663 | 0.92[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12090807 | 1.00[AMR][1000 genomes] |
| rs12091719 | 0.91[YRI][hapmap] |
| rs12096195 | 0.84[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12097847 | 1.00[AMR][1000 genomes] |
| rs16832207 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv548532 | chr1:189758772-190371671 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv932040 | chr1:190005334-190914580 | Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 3 | nsv430013 | chr1:190288297-190351677 | Enhancers Active TSS Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:190336600-190338000 | Weak transcription | Fetal Intestine Large | intestine |
| 2 | chr1:190337600-190338200 | Enhancers | Fetal Intestine Small | intestine |
| 3 | chr1:190337800-190338000 | Strong transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
