Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10800940	1.00[AMR][1000 genomes]
rs10920664	1.00[AMR][1000 genomes]
rs10920667	1.00[AMR][1000 genomes]
rs10920685	1.00[AMR][1000 genomes]
rs10920695	0.91[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10920698	0.91[YRI][hapmap]
rs10920699	0.91[YRI][hapmap]
rs10920701	1.00[LWK][hapmap];0.91[YRI][hapmap]
rs12060718	0.83[LWK][hapmap]
rs12061471	1.00[AMR][1000 genomes]
rs12062310	1.00[AMR][1000 genomes]
rs12067650	1.00[AMR][1000 genomes]
rs12069314	1.00[AMR][1000 genomes]
rs12074400	1.00[AMR][1000 genomes]
rs12078989	1.00[AMR][1000 genomes]
rs12080920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12083780	0.81[YRI][hapmap]
rs12084750	0.82[YRI][hapmap]
rs12086633	1.00[AMR][1000 genomes]
rs12090663	0.91[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12091719	0.83[LWK][hapmap];0.91[YRI][hapmap]
rs12093281	0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12096195	0.91[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16832207	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932040	chr1:190005334-190914580	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv872757	chr1:190351677-190418653	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv872758	chr1:190351677-190510003	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1011611	chr1:190364208-190408174	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1001280	chr1:190368571-190408174	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv872759	chr1:190371671-190446098	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:190365000-190380200	Weak transcription	Fetal Intestine Small	intestine

Quick Search: