Variant report

Variant	rs10920699
Chromosome Location	chr1:190308633-190308634
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10800940	1.00[AMR][1000 genomes]
rs10920656	1.00[AMR][1000 genomes]
rs10920657	0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs10920664	1.00[AMR][1000 genomes]
rs10920667	1.00[AMR][1000 genomes]
rs10920685	1.00[AMR][1000 genomes]
rs10920695	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10920698	1.00[YRI][hapmap]
rs10920701	1.00[YRI][hapmap]
rs12060718	0.83[YRI][hapmap]
rs12061471	1.00[AMR][1000 genomes]
rs12062310	1.00[AMR][1000 genomes]
rs12067650	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12069314	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs12070897	0.91[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12074400	1.00[AMR][1000 genomes]
rs12077686	0.85[YRI][hapmap]
rs12078989	1.00[AMR][1000 genomes]
rs12079649	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs12080072	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs12080920	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12082166	1.00[AMR][1000 genomes]
rs12083780	0.92[YRI][hapmap]
rs12084750	0.92[YRI][hapmap]
rs12084800	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs12086633	1.00[AMR][1000 genomes]
rs12087388	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs12088760	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs12090663	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12090807	0.84[YRI][hapmap];1.00[AMR][1000 genomes]
rs12091719	1.00[YRI][hapmap]
rs12093281	0.92[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12096195	0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12097847	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs16832207	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548532	chr1:189758772-190371671	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv932040	chr1:190005334-190914580	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1013402	chr1:190197674-190332464	Enhancers ZNF genes & repeats Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	nsv535246	chr1:190197674-190332464	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
5	nsv430013	chr1:190288297-190351677	Enhancers Active TSS Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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