Variant report

Variant	rs12080920
Chromosome Location	chr1:190339756-190339757
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10800940	1.00[AMR][1000 genomes]
rs10920656	1.00[AMR][1000 genomes]
rs10920657	1.00[AMR][1000 genomes]
rs10920664	1.00[AMR][1000 genomes]
rs10920667	1.00[AMR][1000 genomes]
rs10920685	1.00[AMR][1000 genomes]
rs10920695	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12061471	1.00[AMR][1000 genomes]
rs12062310	1.00[AMR][1000 genomes]
rs12067650	1.00[AMR][1000 genomes]
rs12069314	1.00[AMR][1000 genomes]
rs12070897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12074400	1.00[AMR][1000 genomes]
rs12078989	1.00[AMR][1000 genomes]
rs12079649	1.00[AMR][1000 genomes]
rs12080072	1.00[AMR][1000 genomes]
rs12082166	1.00[AMR][1000 genomes]
rs12084800	1.00[AMR][1000 genomes]
rs12086633	1.00[AMR][1000 genomes]
rs12087388	1.00[AMR][1000 genomes]
rs12088760	1.00[AMR][1000 genomes]
rs12090663	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12090807	1.00[AMR][1000 genomes]
rs12093281	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12096195	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12097847	1.00[AMR][1000 genomes]
rs16832207	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548532	chr1:189758772-190371671	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv932040	chr1:190005334-190914580	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv430013	chr1:190288297-190351677	Enhancers Active TSS Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:190338000-190339800	Active TSS	Fetal Intestine Large	intestine
2	chr1:190338000-190350000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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