The 2.0 version of rSNPBase

Variant report

Variant rs12078518
Chromosome Location chr1:85224951-85224952
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:85 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:85204200-85230400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr1:85216800-85225000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
3 chr1:85216800-85230000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
4 chr1:85218200-85226800 Enhancers Fetal Brain Male brain
5 chr1:85223600-85228000 Weak transcription HUES64 Cell Line embryonic stem cell
6 chr1:85224000-85225400 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
7 chr1:85224200-85225000 Enhancers ES-UCSF4 Cell Line embryonic stem cell
8 chr1:85224200-85225200 Flanking Active TSS HSMMtube muscle
9 chr1:85224200-85225200 Flanking Active TSS NHLF lung
10 chr1:85224200-85225400 Flanking Active TSS Osteobl bone
11 chr1:85224200-85229400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
12 chr1:85224200-85229400 Weak transcription HUES48 Cell Line embryonic stem cell
13 chr1:85224400-85225000 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
14 chr1:85224400-85225200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
15 chr1:85224400-85225200 Flanking Active TSS Duodenum Mucosa Duodenum
16 chr1:85224400-85225400 Enhancers Primary hematopoietic stem cells short term culture blood
17 chr1:85224400-85225400 Active TSS Brain Cingulate Gyrus brain
18 chr1:85224400-85225400 Flanking Active TSS Brain Dorsolateral Prefrontal Cortex brain
19 chr1:85224400-85225800 Enhancers Stomach Mucosa stomach
20 chr1:85224600-85225000 Enhancers Primary T helper cells PMA-I stimulated --
21 chr1:85224600-85225000 Flanking Active TSS Brain Angular Gyrus brain
22 chr1:85224600-85225000 Flanking Active TSS Brain Anterior Caudate brain
23 chr1:85224600-85225000 Active TSS Colon Smooth Muscle Colon
24 chr1:85224600-85225000 Active TSS Right Ventricle heart
25 chr1:85224600-85225000 Flanking Active TSS Monocytes-CD14+_RO01746 blood
26 chr1:85224600-85225000 Active TSS NHDF-Ad bronchial
27 chr1:85224600-85225200 Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
28 chr1:85224600-85225200 Flanking Active TSS Primary monocytes fromperipheralblood blood
29 chr1:85224600-85225200 Flanking Active TSS Muscle Satellite Cultured Cells --
30 chr1:85224600-85225200 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
31 chr1:85224600-85225200 Active TSS Right Atrium heart
32 chr1:85224600-85225400 Enhancers Primary T helper cells fromperipheralblood blood
33 chr1:85224600-85225400 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
34 chr1:85224600-85225400 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
35 chr1:85224600-85225400 Active TSS Rectal Mucosa Donor 29 rectum
36 chr1:85224600-85225400 Enhancers HMEC breast
37 chr1:85224600-85225600 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
38 chr1:85224600-85225800 Enhancers Cortex derived primary cultured neurospheres brain
39 chr1:85224600-85225800 Enhancers Fetal Heart heart
40 chr1:85224800-85225000 Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
41 chr1:85224800-85225000 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
42 chr1:85224800-85225000 Flanking Active TSS Primary T cells from cord blood blood
43 chr1:85224800-85225000 Bivalent Enhancer Primary T cells fromperipheralblood blood
44 chr1:85224800-85225000 Flanking Active TSS Primary T helper 17 cells PMA-I stimulated --
45 chr1:85224800-85225000 Bivalent Enhancer Primary T regulatory cells fromperipheralblood blood
46 chr1:85224800-85225000 Enhancers Primary mononuclear cells fromperipheralblood Blood
47 chr1:85224800-85225000 Bivalent Enhancer Fetal Adrenal Gland Adrenal Gland
48 chr1:85224800-85225000 Active TSS Rectal Smooth Muscle rectum
49 chr1:85224800-85225000 Active TSS Skeletal Muscle Male skeletal muscle
50 chr1:85224800-85225000 Flanking Active TSS Skeletal Muscle Female skeletal muscle

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Last update: Aug 31, 2015