The 2.0 version of rSNPBase

Variant report

Variant rs12082113
Chromosome Location chr1:85224530-85224531
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:56 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:85204200-85230400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr1:85216800-85225000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
3 chr1:85216800-85230000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
4 chr1:85217000-85224600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
5 chr1:85217000-85224600 Weak transcription HMEC breast
6 chr1:85218200-85226800 Enhancers Fetal Brain Male brain
7 chr1:85219400-85224600 Weak transcription Brain Anterior Caudate brain
8 chr1:85219400-85224800 Weak transcription Primary B cells from peripheral blood blood
9 chr1:85220400-85224600 Weak transcription Cortex derived primary cultured neurospheres brain
10 chr1:85222800-85224600 Enhancers Fetal Brain Female brain
11 chr1:85223600-85224600 Weak transcription iPS-18 Cell Line embryonic stem cell
12 chr1:85223600-85224800 Enhancers Brain Hippocampus Middle brain
13 chr1:85223600-85228000 Weak transcription HUES64 Cell Line embryonic stem cell
14 chr1:85223800-85224800 Weak transcription H1 Cell Line embryonic stem cell
15 chr1:85223800-85224800 Enhancers Brain Germinal Matrix brain
16 chr1:85224000-85224600 Enhancers Breast Myoepithelial Primary Cells Breast
17 chr1:85224000-85225400 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
18 chr1:85224200-85224600 Enhancers Brain Angular Gyrus brain
19 chr1:85224200-85224600 Flanking Active TSS Fetal Heart heart
20 chr1:85224200-85224600 Enhancers HSMM muscle
21 chr1:85224200-85224600 Enhancers NHDF-Ad bronchial
22 chr1:85224200-85224800 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
23 chr1:85224200-85224800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
24 chr1:85224200-85224800 Enhancers Brain Substantia Nigra brain
25 chr1:85224200-85224800 Enhancers Ovary ovary
26 chr1:85224200-85225000 Enhancers ES-UCSF4 Cell Line embryonic stem cell
27 chr1:85224200-85225200 Flanking Active TSS HSMMtube muscle
28 chr1:85224200-85225200 Flanking Active TSS NHLF lung
29 chr1:85224200-85225400 Flanking Active TSS Osteobl bone
30 chr1:85224200-85229400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
31 chr1:85224200-85229400 Weak transcription HUES48 Cell Line embryonic stem cell
32 chr1:85224400-85224600 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
33 chr1:85224400-85224600 Enhancers Primary monocytes fromperipheralblood blood
34 chr1:85224400-85224600 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
35 chr1:85224400-85224600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
36 chr1:85224400-85224600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
37 chr1:85224400-85224600 Enhancers Muscle Satellite Cultured Cells --
38 chr1:85224400-85224600 Flanking Active TSS Right Atrium heart
39 chr1:85224400-85224600 Flanking Active TSS Skeletal Muscle Female skeletal muscle
40 chr1:85224400-85224600 Active TSS Monocytes-CD14+_RO01746 blood
41 chr1:85224400-85224600 Enhancers NH-A brain
42 chr1:85224400-85224800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
43 chr1:85224400-85224800 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
44 chr1:85224400-85224800 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
45 chr1:85224400-85224800 Flanking Active TSS Brain Inferior Temporal Lobe brain
46 chr1:85224400-85224800 Enhancers Fetal Intestine Large intestine
47 chr1:85224400-85224800 Flanking Active TSS Pancreatic Islets Pancreatic Islet
48 chr1:85224400-85224800 Enhancers Left Ventricle heart
49 chr1:85224400-85224800 Enhancers GM12878-XiMat blood
50 chr1:85224400-85225000 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015