Variant report

Variant	rs74096111
Chromosome Location	chr1:85222184-85222185
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:85220070..85222674-chr1:85230426..85232342,2	K562	blood:
2	chr1:85220217..85223143-chr1:85225006..85227154,2	K562	blood:
3	chr1:85155217..85157734-chr1:85221377..85224545,3	K562	blood:
4	chr1:85155217..85157985-chr1:85220918..85224545,4	K562	blood:
5	chr1:85150666..85152741-chr1:85221920..85223682,2	K562	blood:

Variant related genes	Relation type
ENSG00000117155	Chromatin interaction

rs_ID	r²[population]
rs12078518	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12082113	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12084931	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1591972	1.00[AMR][1000 genomes]
rs74096110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85204200-85230400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:85212000-85222600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr1:85216400-85224400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:85216800-85225000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr1:85216800-85230000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr1:85217000-85224000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr1:85217000-85224600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr1:85217000-85224600	Weak transcription	HMEC	breast
9	chr1:85217600-85224400	Weak transcription	Right Atrium	heart
10	chr1:85218200-85226800	Enhancers	Fetal Brain Male	brain
11	chr1:85219000-85223000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr1:85219400-85222600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr1:85219400-85222600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr1:85219400-85222600	Weak transcription	Fetal Heart	heart
15	chr1:85219400-85224000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr1:85219400-85224200	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr1:85219400-85224200	Weak transcription	Duodenum Mucosa	Duodenum
18	chr1:85219400-85224400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr1:85219400-85224400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr1:85219400-85224400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr1:85219400-85224600	Weak transcription	Brain Anterior Caudate	brain
22	chr1:85219400-85224800	Weak transcription	Primary B cells from peripheral blood	blood
23	chr1:85219600-85222600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr1:85220000-85223600	Weak transcription	Brain Hippocampus Middle	brain
25	chr1:85220200-85222800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr1:85220200-85223000	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr1:85220200-85224000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr1:85220200-85224400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr1:85220400-85223800	Weak transcription	Brain Germinal Matrix	brain
30	chr1:85220400-85224600	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr1:85221600-85222800	Weak transcription	Fetal Brain Female	brain
32	chr1:85222000-85222200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr1:85222000-85222400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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