Variant report
Variant | rs12081652 |
---|---|
Chromosome Location | chr1:103508612-103508613 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10493991 | 0.82[ASN][1000 genomes] |
rs10735777 | 0.82[ASN][1000 genomes] |
rs10782918 | 0.82[ASN][1000 genomes] |
rs10782921 | 0.82[ASN][1000 genomes] |
rs11164658 | 0.82[ASN][1000 genomes] |
rs12119661 | 0.85[AFR][1000 genomes] |
rs12121641 | 0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes] |
rs12123031 | 0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[ASN][1000 genomes] |
rs12125729 | 0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[ASN][1000 genomes] |
rs12126622 | 0.80[AMR][1000 genomes];0.82[ASN][1000 genomes] |
rs12127590 | 0.80[AMR][1000 genomes];0.82[ASN][1000 genomes] |
rs12723432 | 0.82[ASN][1000 genomes] |
rs12723922 | 0.82[ASN][1000 genomes] |
rs12725698 | 0.82[ASN][1000 genomes] |
rs12726009 | 0.82[ASN][1000 genomes] |
rs12726958 | 0.82[ASN][1000 genomes] |
rs12728656 | 0.82[ASN][1000 genomes] |
rs12728819 | 0.82[ASN][1000 genomes] |
rs12729449 | 0.82[ASN][1000 genomes] |
rs12729588 | 0.82[ASN][1000 genomes] |
rs12729602 | 0.82[ASN][1000 genomes] |
rs12729803 | 0.82[ASN][1000 genomes] |
rs12729964 | 0.82[ASN][1000 genomes] |
rs12731591 | 0.82[ASN][1000 genomes] |
rs12731843 | 0.82[ASN][1000 genomes] |
rs12733029 | 0.82[ASN][1000 genomes] |
rs12733087 | 0.82[ASN][1000 genomes] |
rs12733164 | 0.82[ASN][1000 genomes] |
rs12733249 | 0.82[ASN][1000 genomes] |
rs12734491 | 0.82[ASN][1000 genomes] |
rs12737364 | 0.82[ASN][1000 genomes] |
rs12738133 | 0.82[ASN][1000 genomes] |
rs12740092 | 0.82[ASN][1000 genomes] |
rs12744290 | 0.82[ASN][1000 genomes] |
rs12744488 | 0.82[ASN][1000 genomes] |
rs12748384 | 0.82[ASN][1000 genomes] |
rs12749646 | 0.82[ASN][1000 genomes] |
rs12750147 | 0.82[ASN][1000 genomes] |
rs12750176 | 0.82[ASN][1000 genomes] |
rs12750303 | 0.82[ASN][1000 genomes] |
rs12750377 | 0.82[ASN][1000 genomes] |
rs12750407 | 0.82[ASN][1000 genomes] |
rs12753436 | 0.82[ASN][1000 genomes] |
rs12754215 | 0.82[ASN][1000 genomes] |
rs12754301 | 0.82[ASN][1000 genomes] |
rs12754606 | 0.82[ASN][1000 genomes] |
rs1337174 | 0.82[ASN][1000 genomes] |
rs1337176 | 0.82[ASN][1000 genomes] |
rs1337177 | 0.82[ASN][1000 genomes] |
rs1337178 | 0.82[ASN][1000 genomes] |
rs13374456 | 0.82[ASN][1000 genomes] |
rs1538041 | 0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes] |
rs1591636 | 0.82[ASN][1000 genomes] |
rs17507967 | 0.80[AMR][1000 genomes];0.82[ASN][1000 genomes] |
rs2050601 | 0.82[ASN][1000 genomes] |
rs2376284 | 0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes] |
rs34110240 | 0.82[ASN][1000 genomes] |
rs34137810 | 0.82[ASN][1000 genomes] |
rs34138324 | 0.82[ASN][1000 genomes] |
rs34206172 | 0.82[ASN][1000 genomes] |
rs34229612 | 0.82[ASN][1000 genomes] |
rs34243101 | 0.82[ASN][1000 genomes] |
rs34305103 | 0.82[ASN][1000 genomes] |
rs34408616 | 0.82[ASN][1000 genomes] |
rs34587338 | 0.82[ASN][1000 genomes] |
rs34637912 | 0.82[ASN][1000 genomes] |
rs34727523 | 0.82[ASN][1000 genomes] |
rs34762213 | 0.82[ASN][1000 genomes] |
rs34765476 | 0.82[ASN][1000 genomes] |
rs34883734 | 0.82[ASN][1000 genomes] |
rs34965749 | 0.82[ASN][1000 genomes] |
rs35037054 | 0.82[ASN][1000 genomes] |
rs35071880 | 0.82[ASN][1000 genomes] |
rs35138059 | 0.82[ASN][1000 genomes] |
rs35192078 | 0.82[ASN][1000 genomes] |
rs35269818 | 0.82[ASN][1000 genomes] |
rs35278135 | 0.82[ASN][1000 genomes] |
rs35514519 | 0.82[ASN][1000 genomes] |
rs35573953 | 0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes] |
rs35648695 | 0.82[ASN][1000 genomes] |
rs35659176 | 0.82[ASN][1000 genomes] |
rs35671668 | 0.82[ASN][1000 genomes] |
rs35707694 | 0.82[ASN][1000 genomes] |
rs35727167 | 0.82[ASN][1000 genomes] |
rs35872185 | 0.82[ASN][1000 genomes] |
rs35884314 | 0.82[ASN][1000 genomes] |
rs35979991 | 0.82[ASN][1000 genomes] |
rs36000197 | 0.82[ASN][1000 genomes] |
rs36005955 | 0.82[ASN][1000 genomes] |
rs36011373 | 0.82[ASN][1000 genomes] |
rs3850459 | 0.82[ASN][1000 genomes] |
rs4478834 | 0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes] |
rs61816501 | 0.82[ASN][1000 genomes] |
rs61816502 | 0.82[ASN][1000 genomes] |
rs61816503 | 0.82[ASN][1000 genomes] |
rs6689957 | 0.82[ASN][1000 genomes] |
rs6695665 | 0.82[ASN][1000 genomes] |
rs71512568 | 0.82[ASN][1000 genomes] |
rs71655803 | 0.82[ASN][1000 genomes] |
rs71655804 | 0.82[ASN][1000 genomes] |
rs71655805 | 0.82[ASN][1000 genomes] |
rs71655806 | 0.82[ASN][1000 genomes] |
rs71664959 | 0.82[ASN][1000 genomes] |
rs71664961 | 0.82[ASN][1000 genomes] |
rs71664962 | 0.82[ASN][1000 genomes] |
rs71664963 | 0.82[ASN][1000 genomes] |
rs71664964 | 0.82[ASN][1000 genomes] |
rs71664965 | 0.82[ASN][1000 genomes] |
rs71664966 | 0.82[ASN][1000 genomes] |
rs71664967 | 0.82[ASN][1000 genomes] |
rs71664968 | 0.82[ASN][1000 genomes] |
rs71664969 | 0.82[ASN][1000 genomes] |
rs71664976 | 0.82[ASN][1000 genomes] |
rs71664978 | 0.82[ASN][1000 genomes] |
rs71664979 | 0.82[ASN][1000 genomes] |
rs71664980 | 0.82[ASN][1000 genomes] |
rs71666999 | 0.82[ASN][1000 genomes] |
rs951414 | 0.82[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv522922 | chr1:103305021-103764640 | Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
2 | nsv870600 | chr1:103336601-103548497 | Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
3 | nsv871475 | chr1:103339272-103548497 | Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
4 | nsv871741 | chr1:103352451-103517428 | Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
5 | nsv871078 | chr1:103352451-103548497 | Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
6 | nsv870607 | chr1:103362909-103528128 | Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
7 | nsv870995 | chr1:103384610-103548497 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
8 | nsv871372 | chr1:103403752-103564540 | Strong transcription Enhancers Active TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
9 | nsv871067 | chr1:103407999-103509323 | Enhancers Weak transcription Strong transcription Genic enhancers Active TSS | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
10 | nsv871736 | chr1:103409100-103548497 | Strong transcription Weak transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
11 | nsv871657 | chr1:103427381-103528128 | Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
12 | nsv462783 | chr1:103438795-103548497 | Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
13 | nsv546937 | chr1:103438795-103548497 | Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
14 | nsv462794 | chr1:103450196-103539007 | Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
15 | nsv546938 | chr1:103450196-103539007 | Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
16 | nsv871286 | chr1:103455217-103528128 | Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
17 | nsv830893 | chr1:103458498-103635579 | Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
18 | nsv871733 | chr1:103459537-103509323 | Strong transcription Weak transcription Enhancers Genic enhancers Active TSS | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
19 | nsv871071 | chr1:103471962-103509323 | Strong transcription Weak transcription Genic enhancers Enhancers Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
20 | nsv871365 | chr1:103476179-103548497 | Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
21 | esv1835970 | chr1:103481299-103510756 | Weak transcription Enhancers Strong transcription Genic enhancers Active TSS | n/a | n/a | inside rSNPs | diseases |
22 | esv3335739 | chr1:103507764-103509762 | Weak transcription Enhancers | n/a | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:103449200-103545200 | Weak transcription | Foreskin Melanocyte Primary Cells skin01 | Skin |
2 | chr1:103460200-103516400 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
3 | chr1:103475800-103516600 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
4 | chr1:103489200-103516400 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
5 | chr1:103504600-103517000 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
6 | chr1:103505200-103510000 | Weak transcription | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
7 | chr1:103505200-103517200 | Weak transcription | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |