Variant report

Variant	rs71664976
Chromosome Location	chr2:59554012-59554013
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 215 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:212)

rs_ID	r²[population]
rs1012283	0.85[ASN][1000 genomes]
rs10493991	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10735777	1.00[ASN][1000 genomes]
rs10782918	0.95[ASN][1000 genomes]
rs10782921	1.00[ASN][1000 genomes]
rs10874672	0.90[ASN][1000 genomes]
rs11164658	0.95[ASN][1000 genomes]
rs11811018	0.85[ASN][1000 genomes]
rs12081652	0.82[ASN][1000 genomes]
rs12119459	0.85[ASN][1000 genomes]
rs12119661	0.92[ASN][1000 genomes]
rs12121641	1.00[ASN][1000 genomes]
rs12123031	0.95[ASN][1000 genomes]
rs12124588	0.85[ASN][1000 genomes]
rs12125729	0.95[ASN][1000 genomes]
rs12126622	0.95[ASN][1000 genomes]
rs12127590	0.95[ASN][1000 genomes]
rs12136338	0.95[ASN][1000 genomes]
rs12136748	0.85[ASN][1000 genomes]
rs12142524	0.85[ASN][1000 genomes]
rs12143676	0.85[ASN][1000 genomes]
rs12722908	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12723167	0.90[ASN][1000 genomes]
rs12723432	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12723922	0.95[ASN][1000 genomes]
rs12724152	0.85[ASN][1000 genomes]
rs12725698	0.95[ASN][1000 genomes]
rs12726009	0.95[ASN][1000 genomes]
rs12726958	0.95[ASN][1000 genomes]
rs12727675	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12727959	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12728656	0.95[ASN][1000 genomes]
rs12728737	0.90[ASN][1000 genomes]
rs12728819	0.95[ASN][1000 genomes]
rs12729449	0.95[ASN][1000 genomes]
rs12729588	0.95[ASN][1000 genomes]
rs12729602	0.95[ASN][1000 genomes]
rs12729803	0.95[ASN][1000 genomes]
rs12729964	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12730712	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12731591	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12731843	0.95[ASN][1000 genomes]
rs12733029	1.00[ASN][1000 genomes]
rs12733087	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12733164	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12733249	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12733933	0.90[ASN][1000 genomes]
rs12734491	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12735139	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12737364	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12738118	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12738133	0.95[ASN][1000 genomes]
rs12740092	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12740462	0.85[ASN][1000 genomes]
rs12741474	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12742130	0.90[ASN][1000 genomes]
rs12742332	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12742440	0.90[ASN][1000 genomes]
rs12742552	0.95[ASN][1000 genomes]
rs12742761	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12743150	0.90[ASN][1000 genomes]
rs12743365	0.85[ASN][1000 genomes]
rs12744290	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12744488	0.95[ASN][1000 genomes]
rs12748084	0.92[ASN][1000 genomes]
rs12748384	0.95[ASN][1000 genomes]
rs12748883	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12749162	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12749361	0.89[ASN][1000 genomes]
rs12749367	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12749646	0.95[ASN][1000 genomes]
rs12750147	0.95[ASN][1000 genomes]
rs12750176	0.95[ASN][1000 genomes]
rs12750179	0.85[ASN][1000 genomes]
rs12750303	0.95[ASN][1000 genomes]
rs12750377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12750407	0.95[ASN][1000 genomes]
rs12753436	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12753580	0.90[ASN][1000 genomes]
rs12753781	0.90[ASN][1000 genomes]
rs12754215	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12754301	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12754606	0.95[ASN][1000 genomes]
rs12756627	0.82[ASN][1000 genomes]
rs12757655	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12757965	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1337174	0.95[ASN][1000 genomes]
rs1337175	0.89[ASN][1000 genomes]
rs1337176	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1337177	0.95[ASN][1000 genomes]
rs1337178	0.95[ASN][1000 genomes]
rs13374456	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1463034	0.85[ASN][1000 genomes]
rs1463035	0.85[ASN][1000 genomes]
rs1538041	1.00[ASN][1000 genomes]
rs1591636	1.00[ASN][1000 genomes]
rs17447925	0.85[ASN][1000 genomes]
rs17506286	0.85[ASN][1000 genomes]
rs17507967	0.95[ASN][1000 genomes]
rs1870958	0.85[ASN][1000 genomes]
rs2050601	0.95[ASN][1000 genomes]
rs2252146	0.90[ASN][1000 genomes]
rs2376284	1.00[ASN][1000 genomes]
rs2622840	0.90[ASN][1000 genomes]
rs2622870	0.90[ASN][1000 genomes]
rs2622874	0.90[ASN][1000 genomes]
rs2622876	0.90[ASN][1000 genomes]
rs2622877	0.90[ASN][1000 genomes]
rs2622880	0.90[ASN][1000 genomes]
rs2786120	0.90[ASN][1000 genomes]
rs2786121	0.90[ASN][1000 genomes]
rs2786122	0.90[ASN][1000 genomes]
rs2786125	0.90[ASN][1000 genomes]
rs2929163	0.90[ASN][1000 genomes]
rs34038518	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34090601	0.85[ASN][1000 genomes]
rs34110240	0.95[ASN][1000 genomes]
rs34137810	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34138324	0.95[ASN][1000 genomes]
rs34157185	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34206172	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34229612	0.95[ASN][1000 genomes]
rs34243101	0.95[ASN][1000 genomes]
rs34277983	0.85[ASN][1000 genomes]
rs34305103	0.95[ASN][1000 genomes]
rs34347324	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34408616	0.95[ASN][1000 genomes]
rs34413966	0.85[ASN][1000 genomes]
rs34456893	0.92[ASN][1000 genomes]
rs34542642	0.85[ASN][1000 genomes]
rs34587338	0.95[ASN][1000 genomes]
rs34637912	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34727523	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34762213	0.95[ASN][1000 genomes]
rs34765476	0.95[ASN][1000 genomes]
rs34822172	0.95[ASN][1000 genomes]
rs34882475	0.85[ASN][1000 genomes]
rs34883734	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34965749	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35037054	0.95[ASN][1000 genomes]
rs35071880	0.95[ASN][1000 genomes]
rs35138059	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35150936	0.90[ASN][1000 genomes]
rs35192078	0.95[ASN][1000 genomes]
rs35196641	0.92[ASN][1000 genomes]
rs35269818	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35278135	0.95[ASN][1000 genomes]
rs35351574	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35384282	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35498106	0.85[ASN][1000 genomes]
rs35512814	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35514519	0.95[ASN][1000 genomes]
rs35573953	1.00[ASN][1000 genomes]
rs35595325	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35613209	0.85[ASN][1000 genomes]
rs35648695	0.95[ASN][1000 genomes]
rs35659176	0.95[ASN][1000 genomes]
rs35671668	0.95[ASN][1000 genomes]
rs35707694	0.95[ASN][1000 genomes]
rs35727167	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35834443	0.92[ASN][1000 genomes]
rs35872185	0.95[ASN][1000 genomes]
rs35884314	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35908252	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35979991	0.95[ASN][1000 genomes]
rs36000197	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36005955	0.95[ASN][1000 genomes]
rs36011373	0.95[ASN][1000 genomes]
rs3767272	0.92[ASN][1000 genomes]
rs3850459	1.00[ASN][1000 genomes]
rs3934352	0.90[ASN][1000 genomes]
rs4353117	0.85[ASN][1000 genomes]
rs4478834	1.00[ASN][1000 genomes]
rs4908283	0.92[ASN][1000 genomes]
rs61816501	0.95[ASN][1000 genomes]
rs61816502	0.95[ASN][1000 genomes]
rs61816503	0.95[ASN][1000 genomes]
rs66473612	0.85[ASN][1000 genomes]
rs6689957	0.95[ASN][1000 genomes]
rs6695665	1.00[ASN][1000 genomes]
rs71512566	0.85[ASN][1000 genomes]
rs71512568	0.95[ASN][1000 genomes]
rs71592265	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71655803	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71655804	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71655805	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71655806	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71655807	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71655808	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71664950	0.85[ASN][1000 genomes]
rs71664951	0.85[ASN][1000 genomes]
rs71664952	0.90[ASN][1000 genomes]
rs71664953	0.83[ASN][1000 genomes]
rs71664954	0.90[ASN][1000 genomes]
rs71664955	0.90[ASN][1000 genomes]
rs71664959	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71664961	0.95[ASN][1000 genomes]
rs71664962	0.95[ASN][1000 genomes]
rs71664963	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71664964	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71664965	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71664966	0.95[ASN][1000 genomes]
rs71664967	0.95[ASN][1000 genomes]
rs71664968	0.95[ASN][1000 genomes]
rs71664969	0.95[ASN][1000 genomes]
rs71664974	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71664978	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71664979	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71664980	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71666999	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7522293	0.92[ASN][1000 genomes]
rs951414	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834170	chr2:59436676-59604794	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv582099	chr2:59494725-59563744	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1003668	chr2:59523642-59592144	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:59553600-59554400	Weak transcription	Dnd41	blood

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