Variant report

Variant	rs35595325
Chromosome Location	chr1:103538743-103538744
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 196 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:183)

rs_ID	r²[population]
rs10493991	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10735777	0.95[ASN][1000 genomes]
rs10782918	0.90[ASN][1000 genomes]
rs10782921	0.95[ASN][1000 genomes]
rs10874672	0.85[ASN][1000 genomes]
rs11164658	0.90[ASN][1000 genomes]
rs12119661	0.87[ASN][1000 genomes]
rs12121641	0.95[ASN][1000 genomes]
rs12123031	0.90[ASN][1000 genomes]
rs12125729	0.90[ASN][1000 genomes]
rs12126622	0.90[ASN][1000 genomes]
rs12127590	0.90[ASN][1000 genomes]
rs12136338	1.00[ASN][1000 genomes]
rs12722908	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12723167	0.85[ASN][1000 genomes]
rs12723432	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12723922	0.90[ASN][1000 genomes]
rs12725698	0.90[ASN][1000 genomes]
rs12726009	0.90[ASN][1000 genomes]
rs12726958	0.90[ASN][1000 genomes]
rs12727675	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12727959	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12728656	0.90[ASN][1000 genomes]
rs12728737	0.85[ASN][1000 genomes]
rs12728819	0.90[ASN][1000 genomes]
rs12729449	0.90[ASN][1000 genomes]
rs12729588	0.90[ASN][1000 genomes]
rs12729602	0.90[ASN][1000 genomes]
rs12729803	0.90[ASN][1000 genomes]
rs12729964	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12730712	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12731591	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12731843	0.90[ASN][1000 genomes]
rs12733029	0.95[ASN][1000 genomes]
rs12733087	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12733164	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12733249	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12733933	0.85[ASN][1000 genomes]
rs12734491	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12735139	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12737364	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12738118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12738133	0.90[ASN][1000 genomes]
rs12740092	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12741474	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12742130	0.85[ASN][1000 genomes]
rs12742332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12742440	0.85[ASN][1000 genomes]
rs12742552	0.89[ASN][1000 genomes]
rs12742761	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12743150	0.85[ASN][1000 genomes]
rs12744290	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12744488	0.90[ASN][1000 genomes]
rs12748084	0.92[ASN][1000 genomes]
rs12748384	0.90[ASN][1000 genomes]
rs12748883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12749162	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12749361	0.84[ASN][1000 genomes]
rs12749367	0.84[ASN][1000 genomes]
rs12749646	0.90[ASN][1000 genomes]
rs12750147	0.90[ASN][1000 genomes]
rs12750176	0.90[ASN][1000 genomes]
rs12750303	0.90[ASN][1000 genomes]
rs12750377	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12750407	0.90[ASN][1000 genomes]
rs12753436	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12753580	0.85[ASN][1000 genomes]
rs12753781	0.85[ASN][1000 genomes]
rs12754215	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12754301	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12754606	0.90[ASN][1000 genomes]
rs12757655	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12757965	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1337174	0.90[ASN][1000 genomes]
rs1337175	0.84[ASN][1000 genomes]
rs1337176	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1337177	0.90[ASN][1000 genomes]
rs1337178	0.90[ASN][1000 genomes]
rs13374456	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1538041	0.95[ASN][1000 genomes]
rs1591636	0.95[ASN][1000 genomes]
rs17127510	0.82[EUR][1000 genomes]
rs17507967	0.90[ASN][1000 genomes]
rs2050601	0.90[ASN][1000 genomes]
rs2252146	0.85[ASN][1000 genomes]
rs2376284	0.95[ASN][1000 genomes]
rs2622840	0.85[ASN][1000 genomes]
rs2622870	0.85[ASN][1000 genomes]
rs2622874	0.85[ASN][1000 genomes]
rs2622876	0.85[ASN][1000 genomes]
rs2622877	0.85[ASN][1000 genomes]
rs2622880	0.85[ASN][1000 genomes]
rs2786120	0.85[ASN][1000 genomes]
rs2786121	0.85[ASN][1000 genomes]
rs2786122	0.85[ASN][1000 genomes]
rs2786125	0.85[ASN][1000 genomes]
rs2929163	0.85[ASN][1000 genomes]
rs34038518	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34110240	0.90[ASN][1000 genomes]
rs34137810	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34138324	0.90[ASN][1000 genomes]
rs34157185	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34206172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34229612	0.90[ASN][1000 genomes]
rs34243101	0.90[ASN][1000 genomes]
rs34305103	0.90[ASN][1000 genomes]
rs34347324	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34408616	0.90[ASN][1000 genomes]
rs34456893	0.92[ASN][1000 genomes]
rs34587338	0.90[ASN][1000 genomes]
rs34637912	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34727523	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34762213	0.90[ASN][1000 genomes]
rs34765476	0.90[ASN][1000 genomes]
rs34822172	1.00[ASN][1000 genomes]
rs34883734	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34965749	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35037054	0.90[ASN][1000 genomes]
rs35071880	0.90[ASN][1000 genomes]
rs35138059	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35150936	0.85[ASN][1000 genomes]
rs35192078	0.90[ASN][1000 genomes]
rs35196641	0.92[ASN][1000 genomes]
rs35269818	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35278135	0.90[ASN][1000 genomes]
rs35351574	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35384282	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35512814	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35514519	0.90[ASN][1000 genomes]
rs35573953	0.95[ASN][1000 genomes]
rs35648695	0.90[ASN][1000 genomes]
rs35659176	0.90[ASN][1000 genomes]
rs35671668	0.90[ASN][1000 genomes]
rs35707694	0.90[ASN][1000 genomes]
rs35727167	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35834443	0.92[ASN][1000 genomes]
rs35872185	0.90[ASN][1000 genomes]
rs35884314	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35908252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35979991	0.90[ASN][1000 genomes]
rs36000197	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36005955	0.90[ASN][1000 genomes]
rs36011373	0.90[ASN][1000 genomes]
rs3767272	0.87[ASN][1000 genomes]
rs3850459	0.95[ASN][1000 genomes]
rs3934352	0.85[ASN][1000 genomes]
rs4478834	0.95[ASN][1000 genomes]
rs4908283	0.92[ASN][1000 genomes]
rs56361645	0.82[EUR][1000 genomes]
rs61816501	0.90[ASN][1000 genomes]
rs61816502	0.90[ASN][1000 genomes]
rs61816503	0.90[ASN][1000 genomes]
rs6689957	0.90[ASN][1000 genomes]
rs6695665	0.95[ASN][1000 genomes]
rs71512568	0.90[ASN][1000 genomes]
rs71592265	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71655803	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71655804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71655805	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71655806	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71655807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71655808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71664952	0.85[ASN][1000 genomes]
rs71664954	0.85[ASN][1000 genomes]
rs71664955	0.85[ASN][1000 genomes]
rs71664959	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71664961	0.90[ASN][1000 genomes]
rs71664962	0.90[ASN][1000 genomes]
rs71664963	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71664964	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71664965	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71664966	0.90[ASN][1000 genomes]
rs71664967	0.90[ASN][1000 genomes]
rs71664968	0.90[ASN][1000 genomes]
rs71664969	0.90[ASN][1000 genomes]
rs71664974	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71664976	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71664978	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71664979	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71664980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71666999	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7522293	0.97[ASN][1000 genomes]
rs951414	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522922	chr1:103305021-103764640	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv870600	chr1:103336601-103548497	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv871475	chr1:103339272-103548497	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv871078	chr1:103352451-103548497	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv870995	chr1:103384610-103548497	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv871372	chr1:103403752-103564540	Strong transcription Enhancers Active TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv871736	chr1:103409100-103548497	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv462783	chr1:103438795-103548497	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv546937	chr1:103438795-103548497	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv462794	chr1:103450196-103539007	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv546938	chr1:103450196-103539007	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv830893	chr1:103458498-103635579	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	nsv871365	chr1:103476179-103548497	Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:103449200-103545200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr1:103517400-103557200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:103517600-103550800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:103519600-103543000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr1:103522400-103559000	Weak transcription	HSMM	muscle
6	chr1:103525000-103540400	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr1:103525200-103539800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:103531200-103544200	Weak transcription	NH-A	brain
9	chr1:103537400-103539000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:103537400-103539400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr1:103537600-103539200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr1:103538400-103548600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr1:103538600-103540600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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