Variant report
Variant | rs34038518 |
---|---|
Chromosome Location | chr1:103552224-103552225 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10493991 | 0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs10735777 | 0.92[ASN][1000 genomes] |
rs10782918 | 0.87[ASN][1000 genomes] |
rs10782921 | 0.92[ASN][1000 genomes] |
rs10874672 | 0.82[ASN][1000 genomes] |
rs11164658 | 0.87[ASN][1000 genomes] |
rs12119661 | 0.85[ASN][1000 genomes] |
rs12121641 | 0.92[ASN][1000 genomes] |
rs12123031 | 0.87[ASN][1000 genomes] |
rs12125729 | 0.87[ASN][1000 genomes] |
rs12126622 | 0.87[ASN][1000 genomes] |
rs12127590 | 0.87[ASN][1000 genomes] |
rs12136338 | 0.97[ASN][1000 genomes] |
rs12722908 | 1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs12723167 | 0.82[ASN][1000 genomes] |
rs12723432 | 0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs12723922 | 0.87[ASN][1000 genomes] |
rs12725698 | 0.87[ASN][1000 genomes] |
rs12726009 | 0.87[ASN][1000 genomes] |
rs12726958 | 0.87[ASN][1000 genomes] |
rs12727675 | 0.91[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs12727959 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12728656 | 0.87[ASN][1000 genomes] |
rs12728737 | 0.82[ASN][1000 genomes] |
rs12728819 | 0.87[ASN][1000 genomes] |
rs12729449 | 0.87[ASN][1000 genomes] |
rs12729588 | 0.87[ASN][1000 genomes] |
rs12729602 | 0.87[ASN][1000 genomes] |
rs12729803 | 0.87[ASN][1000 genomes] |
rs12729964 | 0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs12730712 | 0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs12731591 | 0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs12731843 | 0.87[ASN][1000 genomes] |
rs12733029 | 0.92[ASN][1000 genomes] |
rs12733087 | 0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs12733164 | 0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs12733249 | 0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs12733933 | 0.82[ASN][1000 genomes] |
rs12734491 | 0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs12735139 | 1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs12737364 | 0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs12738118 | 0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs12738133 | 0.87[ASN][1000 genomes] |
rs12740092 | 0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs12741474 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12742130 | 0.82[ASN][1000 genomes] |
rs12742332 | 0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs12742440 | 0.82[ASN][1000 genomes] |
rs12742552 | 0.87[ASN][1000 genomes] |
rs12742761 | 1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs12743150 | 0.82[ASN][1000 genomes] |
rs12744290 | 0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs12744488 | 0.87[ASN][1000 genomes] |
rs12748084 | 0.89[ASN][1000 genomes] |
rs12748384 | 0.87[ASN][1000 genomes] |
rs12748883 | 1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs12749162 | 1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs12749361 | 0.81[ASN][1000 genomes] |
rs12749367 | 0.81[ASN][1000 genomes] |
rs12749646 | 0.87[ASN][1000 genomes] |
rs12750147 | 0.87[ASN][1000 genomes] |
rs12750176 | 0.87[ASN][1000 genomes] |
rs12750303 | 0.87[ASN][1000 genomes] |
rs12750377 | 0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs12750407 | 0.87[ASN][1000 genomes] |
rs12753436 | 0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs12753580 | 0.82[ASN][1000 genomes] |
rs12753781 | 0.82[ASN][1000 genomes] |
rs12754215 | 0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs12754301 | 0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs12754606 | 0.87[ASN][1000 genomes] |
rs12757655 | 0.91[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs12757965 | 0.91[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs1337174 | 0.87[ASN][1000 genomes] |
rs1337175 | 0.81[ASN][1000 genomes] |
rs1337176 | 0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs1337177 | 0.87[ASN][1000 genomes] |
rs1337178 | 0.87[ASN][1000 genomes] |
rs13374456 | 0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs1538041 | 0.92[ASN][1000 genomes] |
rs1591636 | 0.92[ASN][1000 genomes] |
rs17127510 | 0.82[EUR][1000 genomes] |
rs17507967 | 0.87[ASN][1000 genomes] |
rs2050601 | 0.87[ASN][1000 genomes] |
rs2252146 | 0.82[ASN][1000 genomes] |
rs2376284 | 0.92[ASN][1000 genomes] |
rs2622840 | 0.82[ASN][1000 genomes] |
rs2622870 | 0.82[ASN][1000 genomes] |
rs2622874 | 0.82[ASN][1000 genomes] |
rs2622876 | 0.82[ASN][1000 genomes] |
rs2622877 | 0.82[ASN][1000 genomes] |
rs2622880 | 0.82[ASN][1000 genomes] |
rs2786120 | 0.82[ASN][1000 genomes] |
rs2786121 | 0.82[ASN][1000 genomes] |
rs2786122 | 0.82[ASN][1000 genomes] |
rs2786125 | 0.82[ASN][1000 genomes] |
rs2929163 | 0.82[ASN][1000 genomes] |
rs34110240 | 0.87[ASN][1000 genomes] |
rs34137810 | 0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs34138324 | 0.87[ASN][1000 genomes] |
rs34157185 | 1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs34206172 | 0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs34229612 | 0.87[ASN][1000 genomes] |
rs34243101 | 0.87[ASN][1000 genomes] |
rs34305103 | 0.87[ASN][1000 genomes] |
rs34347324 | 0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs34408616 | 0.87[ASN][1000 genomes] |
rs34456893 | 0.89[ASN][1000 genomes] |
rs34587338 | 0.87[ASN][1000 genomes] |
rs34637912 | 0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs34727523 | 0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs34762213 | 0.87[ASN][1000 genomes] |
rs34765476 | 0.87[ASN][1000 genomes] |
rs34822172 | 0.97[ASN][1000 genomes] |
rs34883734 | 0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs34965749 | 0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs35037054 | 0.87[ASN][1000 genomes] |
rs35071880 | 0.87[ASN][1000 genomes] |
rs35138059 | 0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs35150936 | 0.82[ASN][1000 genomes] |
rs35192078 | 0.87[ASN][1000 genomes] |
rs35196641 | 0.89[ASN][1000 genomes] |
rs35269818 | 0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs35278135 | 0.87[ASN][1000 genomes] |
rs35351574 | 1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs35384282 | 0.88[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs35512814 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs35514519 | 0.87[ASN][1000 genomes] |
rs35573953 | 0.92[ASN][1000 genomes] |
rs35595325 | 1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs35648695 | 0.87[ASN][1000 genomes] |
rs35659176 | 0.87[ASN][1000 genomes] |
rs35671668 | 0.87[ASN][1000 genomes] |
rs35707694 | 0.87[ASN][1000 genomes] |
rs35727167 | 0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs35834443 | 0.89[ASN][1000 genomes] |
rs35872185 | 0.87[ASN][1000 genomes] |
rs35884314 | 0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs35908252 | 1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs35979991 | 0.87[ASN][1000 genomes] |
rs36000197 | 0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs36005955 | 0.87[ASN][1000 genomes] |
rs36011373 | 0.87[ASN][1000 genomes] |
rs3767272 | 0.85[ASN][1000 genomes] |
rs3850459 | 0.92[ASN][1000 genomes] |
rs3934352 | 0.82[ASN][1000 genomes] |
rs4478834 | 0.92[ASN][1000 genomes] |
rs4908283 | 0.89[ASN][1000 genomes] |
rs56361645 | 0.82[EUR][1000 genomes] |
rs61816501 | 0.87[ASN][1000 genomes] |
rs61816502 | 0.87[ASN][1000 genomes] |
rs61816503 | 0.87[ASN][1000 genomes] |
rs6689957 | 0.87[ASN][1000 genomes] |
rs6695665 | 0.92[ASN][1000 genomes] |
rs71512568 | 0.87[ASN][1000 genomes] |
rs71592265 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs71655803 | 0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs71655804 | 0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs71655805 | 0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs71655806 | 0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs71655807 | 1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs71655808 | 1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs71664952 | 0.82[ASN][1000 genomes] |
rs71664954 | 0.82[ASN][1000 genomes] |
rs71664955 | 0.82[ASN][1000 genomes] |
rs71664959 | 0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs71664961 | 0.87[ASN][1000 genomes] |
rs71664962 | 0.87[ASN][1000 genomes] |
rs71664963 | 0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs71664964 | 0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs71664965 | 0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs71664966 | 0.87[ASN][1000 genomes] |
rs71664967 | 0.87[ASN][1000 genomes] |
rs71664968 | 0.87[ASN][1000 genomes] |
rs71664969 | 0.87[ASN][1000 genomes] |
rs71664974 | 0.85[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs71664976 | 0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs71664978 | 0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs71664979 | 0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs71664980 | 0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs71666999 | 0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs7522293 | 0.95[ASN][1000 genomes] |
rs951414 | 0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv522922 | chr1:103305021-103764640 | Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
2 | nsv871372 | chr1:103403752-103564540 | Strong transcription Enhancers Active TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
3 | nsv830893 | chr1:103458498-103635579 | Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
4 | nsv931600 | chr1:103548397-104161031 | Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:103517400-103557200 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
2 | chr1:103522400-103559000 | Weak transcription | HSMM | muscle |
3 | chr1:103539600-103556600 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
4 | chr1:103544000-103570400 | Weak transcription | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
5 | chr1:103545000-103566800 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
6 | chr1:103546200-103556000 | Strong transcription | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
7 | chr1:103548000-103564400 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
8 | chr1:103552000-103553000 | Strong transcription | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |