Variant report

rSNPs within LD-proxies of this variant (count:11)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871835	chr1:78528803-79501129	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv870807	chr1:78867347-79032598	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv871260	chr1:78957859-78976570	Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:78956200-78961400	Active TSS	Duodenum Smooth Muscle	Duodenum
2	chr1:78957600-78959200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:78957800-78961600	Weak transcription	HSMM	muscle
4	chr1:78957800-78961600	Weak transcription	HSMMtube	muscle
5	chr1:78957800-78966000	Weak transcription	Ovary	ovary
6	chr1:78957800-78966000	Weak transcription	Pancreas	Pancrea
7	chr1:78958000-78960400	Enhancers	Fetal Brain Male	brain
8	chr1:78958000-78962200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr1:78958000-78965600	Weak transcription	NHLF	lung
10	chr1:78958400-78959000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr1:78958400-78959400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr1:78958400-78959600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr1:78958400-78959600	Genic enhancers	Osteobl	bone
14	chr1:78958400-78960400	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr1:78958600-78959000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr1:78958600-78959200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr1:78958600-78959400	Transcr. at gene 5' and 3'	NHDF-Ad	bronchial
18	chr1:78958600-78961200	Active TSS	Stomach Smooth Muscle	stomach
19	chr1:78958800-78959600	Weak transcription	Rectal Smooth Muscle	rectum
20	chr1:78958800-78966200	Weak transcription	Gastric	stomach

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