Variant report

Variant	rs57564445
Chromosome Location	chr1:79092060-79092061
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12088246	1.00[EUR][1000 genomes]
rs61324182	1.00[EUR][1000 genomes]
rs72933702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72935616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72935624	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7513319	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7517603	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871835	chr1:78528803-79501129	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv830315	chr1:79008443-79200591	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:79086800-79092200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:79086800-79092800	Weak transcription	NHDF-Ad	bronchial
3	chr1:79086800-79092800	Weak transcription	Osteobl	bone
4	chr1:79086800-79108800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr1:79087200-79097400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr1:79088400-79094000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:79088600-79110600	Weak transcription	Fetal Thymus	thymus
8	chr1:79088800-79092600	Weak transcription	Brain Substantia Nigra	brain
9	chr1:79088800-79095400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr1:79089000-79095800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr1:79089400-79094200	Weak transcription	Primary B cells from peripheral blood	blood
12	chr1:79089400-79094400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr1:79089400-79098800	Weak transcription	Fetal Muscle Leg	muscle
14	chr1:79089400-79107200	Weak transcription	Ovary	ovary
15	chr1:79089600-79093600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr1:79089600-79098800	Weak transcription	Aorta	Aorta
17	chr1:79089800-79093600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr1:79089800-79115000	Weak transcription	Small Intestine	intestine
19	chr1:79090200-79092200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr1:79090800-79092600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr1:79090800-79092600	Active TSS	GM12878-XiMat	blood
22	chr1:79090800-79110000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr1:79090800-79110000	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr1:79091200-79092400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr1:79091200-79094200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr1:79092000-79092600	Enhancers	Primary T helper cells PMA-I stimulated	--

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