Variant report

Variant	rs72935624
Chromosome Location	chr1:79108496-79108497
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12088246	1.00[EUR][1000 genomes]
rs57564445	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61324182	1.00[EUR][1000 genomes]
rs72933702	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72935616	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7513319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7517603	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871835	chr1:78528803-79501129	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv830315	chr1:79008443-79200591	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv871140	chr1:79095581-79155134	Strong transcription Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:79086800-79108800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr1:79088600-79110600	Weak transcription	Fetal Thymus	thymus
3	chr1:79089800-79115000	Weak transcription	Small Intestine	intestine
4	chr1:79090800-79110000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr1:79090800-79110000	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr1:79094400-79110600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr1:79094600-79110000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr1:79094600-79110200	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr1:79094600-79115200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr1:79099200-79112800	Weak transcription	Lung	lung
11	chr1:79101400-79109800	Weak transcription	Primary T cells from cord blood	blood
12	chr1:79101400-79115400	Weak transcription	Left Ventricle	heart
13	chr1:79102200-79114800	Weak transcription	Adipose Nuclei	Adipose
14	chr1:79102600-79109200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr1:79103000-79111600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr1:79103000-79112800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr1:79103400-79113000	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr1:79105000-79115400	Weak transcription	Psoas Muscle	Psoas
19	chr1:79105600-79115400	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr1:79106400-79110600	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr1:79107200-79111400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr1:79107400-79112800	Weak transcription	Right Atrium	heart
23	chr1:79107600-79115600	Weak transcription	Aorta	Aorta
24	chr1:79107800-79108600	Strong transcription	GM12878-XiMat	blood
25	chr1:79107800-79108800	Weak transcription	Liver	Liver
26	chr1:79107800-79115400	Weak transcription	Ovary	ovary
27	chr1:79108000-79108800	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr1:79108200-79115000	Weak transcription	Brain Hippocampus Middle	brain
29	chr1:79108400-79111200	Weak transcription	HUVEC	blood vessel
30	chr1:79108400-79112800	Weak transcription	Fetal Muscle Leg	muscle

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