Variant report

Variant	rs12090716
Chromosome Location	chr1:66993186-66993187
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12057477	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12057623	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12058383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12061766	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12065209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12074818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12074869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12080693	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12085621	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12095225	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1408853	1.00[AMR][1000 genomes]
rs58395344	1.00[AMR][1000 genomes]
rs60345885	1.00[AMR][1000 genomes]
rs60385055	1.00[AMR][1000 genomes]
rs60576866	1.00[AMR][1000 genomes]
rs60854200	1.00[AMR][1000 genomes]
rs7521230	1.00[AMR][1000 genomes]
rs7521704	1.00[AMR][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:66988000-66993400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr1:66988400-66998200	Weak transcription	Osteobl	bone
3	chr1:66990800-66994800	Enhancers	NHLF	lung
4	chr1:66991600-66993600	Enhancers	Fetal Heart	heart
5	chr1:66991800-66998600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:66992000-66993400	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr1:66992000-66993800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:66992000-66997400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr1:66992600-66995000	Enhancers	HUVEC	blood vessel
10	chr1:66993000-66993400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr1:66993000-66993600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr1:66993000-66993600	Enhancers	NHDF-Ad	bronchial

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links