Variant report

Variant	rs58395344
Chromosome Location	chr1:67176108-67176109
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12057477	1.00[AMR][1000 genomes]
rs12058383	1.00[AMR][1000 genomes]
rs12061766	1.00[AMR][1000 genomes]
rs12065209	1.00[AMR][1000 genomes]
rs12090716	1.00[AMR][1000 genomes]
rs12095225	1.00[AMR][1000 genomes]
rs1408853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4463637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57339861	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57595509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57894680	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58494073	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60345885	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60385055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60576866	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60854200	1.00[AMR][1000 genomes]
rs7521230	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7521704	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869413	chr1:67082512-67414286	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv830093	chr1:67173594-67348264	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67155800-67177200	Weak transcription	Brain Anterior Caudate	brain
2	chr1:67156000-67177200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr1:67156800-67191400	Weak transcription	Fetal Brain Female	brain
4	chr1:67157000-67208800	Weak transcription	Brain Germinal Matrix	brain
5	chr1:67157200-67189600	Weak transcription	Brain Hippocampus Middle	brain
6	chr1:67157400-67191600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr1:67158200-67189400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr1:67158400-67191400	Weak transcription	Left Ventricle	heart
9	chr1:67158600-67189400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr1:67160400-67189400	Weak transcription	Brain Angular Gyrus	brain
11	chr1:67165200-67191400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr1:67165400-67187600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr1:67165400-67191600	Weak transcription	Aorta	Aorta
14	chr1:67165400-67206800	Weak transcription	Fetal Brain Male	brain
15	chr1:67168000-67185000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr1:67170200-67186800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr1:67171400-67189400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr1:67171400-67198000	Weak transcription	NHLF	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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