Variant report

Variant	rs12091231
Chromosome Location	chr1:214729638-214729639
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:214728213..214729899-chr1:214734950..214736778,2	MCF-7	breast:
2	chr1:214722796..214725948-chr1:214727501..214730232,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152104	Chromatin interaction

rs_ID	r²[population]
rs12092442	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12563170	0.81[AMR][1000 genomes]
rs34117447	0.81[AMR][1000 genomes]
rs35134841	0.81[AMR][1000 genomes]
rs35357091	0.81[AMR][1000 genomes]
rs57190864	0.84[ASN][1000 genomes]
rs57535424	0.85[ASN][1000 genomes]
rs66582411	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs67168372	0.81[AMR][1000 genomes]
rs67349118	0.91[ASN][1000 genomes]
rs71639536	0.81[AMR][1000 genomes]
rs72759639	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214726200-214729800	Weak transcription	Aorta	Aorta
2	chr1:214726200-214730800	Weak transcription	HSMM	muscle
3	chr1:214726200-214731000	Weak transcription	NHEK	skin
4	chr1:214726200-214731200	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr1:214726400-214730800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr1:214726400-214731200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:214726400-214731200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr1:214726400-214731200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr1:214726400-214731400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr1:214726800-214731000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr1:214726800-214731000	Weak transcription	NHLF	lung
12	chr1:214726800-214731200	Weak transcription	NHDF-Ad	bronchial
13	chr1:214727000-214731200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr1:214727000-214731200	Weak transcription	Hela-S3	cervix
15	chr1:214727000-214731200	Weak transcription	HMEC	breast
16	chr1:214727200-214730200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr1:214727200-214730800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr1:214727200-214731000	Weak transcription	A549	lung
19	chr1:214727200-214731000	Weak transcription	NH-A	brain
20	chr1:214727200-214731000	Weak transcription	Osteobl	bone
21	chr1:214727200-214731200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr1:214727200-214731200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr1:214727200-214731400	Weak transcription	HUVEC	blood vessel
24	chr1:214727200-214732400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr1:214727200-214732600	Weak transcription	Fetal Kidney	kidney
26	chr1:214727400-214729800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr1:214727400-214731200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr1:214727400-214731200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr1:214727400-214731200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr1:214727400-214731200	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr1:214727600-214731200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr1:214727600-214731400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr1:214727800-214730800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr1:214729000-214730400	Enhancers	HepG2	liver
35	chr1:214729200-214729800	Enhancers	GM12878-XiMat	blood
36	chr1:214729400-214730400	Enhancers	Fetal Intestine Small	intestine
37	chr1:214729600-214730200	Enhancers	Fetal Intestine Large	intestine

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