Variant report

Variant	rs34117447
Chromosome Location	chr1:214755768-214755769
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:214754373..214757120-chr1:214760839..214763776,3	K562	blood:
2	chr1:214556095..214557675-chr1:214755498..214757303,2	MCF-7	breast:
3	chr1:214723713..214727023-chr1:214751584..214755910,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152104	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12091231	0.81[AMR][1000 genomes]
rs12092442	0.82[AMR][1000 genomes]
rs12563056	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12563170	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12563397	0.94[ASN][1000 genomes]
rs12563432	0.94[ASN][1000 genomes]
rs12565714	0.94[ASN][1000 genomes]
rs12728827	0.94[ASN][1000 genomes]
rs12737021	0.94[ASN][1000 genomes]
rs12758214	0.94[ASN][1000 genomes]
rs17735992	0.94[ASN][1000 genomes]
rs1877151	0.94[ASN][1000 genomes]
rs34225982	0.94[ASN][1000 genomes]
rs35134841	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35357091	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66582411	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67168372	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71639536	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72759639	0.88[AMR][1000 genomes]
rs72759645	0.90[ASN][1000 genomes]

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214752800-214758400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr1:214753800-214758600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:214754000-214758600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr1:214754000-214758600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr1:214754400-214755800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:214754400-214755800	Flanking Active TSS	NHEK	skin
7	chr1:214754400-214758400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:214754400-214758600	Enhancers	HMEC	breast
9	chr1:214754400-214758600	Enhancers	Osteobl	bone
10	chr1:214754600-214755800	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr1:214754600-214755800	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr1:214754600-214755800	Enhancers	HUVEC	blood vessel
13	chr1:214754600-214755800	Enhancers	NH-A	brain
14	chr1:214754600-214758600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr1:214754600-214758600	Enhancers	HSMM	muscle
16	chr1:214754800-214755800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr1:214754800-214755800	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr1:214754800-214756000	Enhancers	NHLF	lung
19	chr1:214754800-214756200	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr1:214754800-214756200	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr1:214754800-214756400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr1:214755000-214755800	Flanking Active TSS	A549	lung
23	chr1:214755000-214755800	Enhancers	Hela-S3	cervix
24	chr1:214755000-214756200	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr1:214755000-214756200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr1:214755000-214756800	Enhancers	Colon Smooth Muscle	Colon
27	chr1:214755200-214755800	Enhancers	H9 Cell Line	embryonic stem cell
28	chr1:214755200-214755800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr1:214755200-214755800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr1:214755200-214755800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr1:214755200-214755800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr1:214755200-214755800	Enhancers	Aorta	Aorta
33	chr1:214755200-214755800	Enhancers	Left Ventricle	heart
34	chr1:214755200-214755800	Enhancers	Pancreas	Pancrea
35	chr1:214755200-214755800	Enhancers	Placenta Amnion	Placenta Amnion
36	chr1:214755200-214756000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr1:214755200-214756200	Enhancers	H1 Cell Line	embryonic stem cell
38	chr1:214755200-214756200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr1:214755200-214756200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr1:214755200-214756200	Enhancers	Esophagus	oesophagus
41	chr1:214755200-214756400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
42	chr1:214755200-214756400	Enhancers	iPS-20b Cell Line	embryonic stem cell
43	chr1:214755200-214756600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr1:214755200-214756600	Enhancers	HUES6 Cell Line	embryonic stem cell
45	chr1:214755400-214755800	Flanking Active TSS	NHDF-Ad	bronchial
46	chr1:214755400-214756000	Enhancers	Rectal Smooth Muscle	rectum
47	chr1:214755600-214755800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr1:214755600-214756000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr1:214755600-214757400	Weak transcription	HSMMtube	muscle

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