Variant report

Variant	rs17735992
Chromosome Location	chr1:214755440-214755441
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:214754373..214757120-chr1:214760839..214763776,3	K562	blood:
2	chr1:214723713..214727023-chr1:214751584..214755910,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152104	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11120349	0.83[CHB][hapmap];0.88[JPT][hapmap]
rs12563056	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12563170	0.92[CHB][hapmap];0.84[JPT][hapmap];0.94[ASN][1000 genomes]
rs12563397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12563432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12565714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12728827	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12737021	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12758214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1877151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34117447	0.94[ASN][1000 genomes]
rs34225982	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35134841	0.93[ASN][1000 genomes]
rs35357091	0.94[ASN][1000 genomes]
rs67168372	0.94[ASN][1000 genomes]
rs71639536	0.94[ASN][1000 genomes]
rs72759645	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214750800-214755600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:214752800-214758400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr1:214753800-214758600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:214754000-214758600	Enhancers	Muscle Satellite Cultured Cells	--
5	chr1:214754000-214758600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:214754400-214755800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:214754400-214755800	Flanking Active TSS	NHEK	skin
8	chr1:214754400-214758400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:214754400-214758600	Enhancers	HMEC	breast
10	chr1:214754400-214758600	Enhancers	Osteobl	bone
11	chr1:214754600-214755800	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr1:214754600-214755800	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr1:214754600-214755800	Enhancers	HUVEC	blood vessel
14	chr1:214754600-214755800	Enhancers	NH-A	brain
15	chr1:214754600-214758600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr1:214754600-214758600	Enhancers	HSMM	muscle
17	chr1:214754800-214755800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr1:214754800-214755800	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr1:214754800-214756000	Enhancers	NHLF	lung
20	chr1:214754800-214756200	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr1:214754800-214756200	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr1:214754800-214756400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr1:214755000-214755600	Enhancers	Dnd41	blood
24	chr1:214755000-214755800	Flanking Active TSS	A549	lung
25	chr1:214755000-214755800	Enhancers	Hela-S3	cervix
26	chr1:214755000-214756200	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr1:214755000-214756200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr1:214755000-214756800	Enhancers	Colon Smooth Muscle	Colon
29	chr1:214755200-214755600	Enhancers	HSMMtube	muscle
30	chr1:214755200-214755800	Enhancers	H9 Cell Line	embryonic stem cell
31	chr1:214755200-214755800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr1:214755200-214755800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr1:214755200-214755800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr1:214755200-214755800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr1:214755200-214755800	Enhancers	Aorta	Aorta
36	chr1:214755200-214755800	Enhancers	Left Ventricle	heart
37	chr1:214755200-214755800	Enhancers	Pancreas	Pancrea
38	chr1:214755200-214755800	Enhancers	Placenta Amnion	Placenta Amnion
39	chr1:214755200-214756000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr1:214755200-214756200	Enhancers	H1 Cell Line	embryonic stem cell
41	chr1:214755200-214756200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr1:214755200-214756200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr1:214755200-214756200	Enhancers	Esophagus	oesophagus
44	chr1:214755200-214756400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
45	chr1:214755200-214756400	Enhancers	iPS-20b Cell Line	embryonic stem cell
46	chr1:214755200-214756600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr1:214755200-214756600	Enhancers	HUES6 Cell Line	embryonic stem cell
48	chr1:214755400-214755600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr1:214755400-214755800	Flanking Active TSS	NHDF-Ad	bronchial
50	chr1:214755400-214756000	Enhancers	Rectal Smooth Muscle	rectum

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