Variant report

Variant	rs12563056
Chromosome Location	chr1:214757755-214757756
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12563170	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12563397	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12563432	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12565714	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12728827	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12737021	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12758214	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17735992	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1877151	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34117447	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs34225982	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35134841	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs35357091	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs67168372	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs71639536	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs72759645	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214752800-214758400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr1:214753800-214758600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:214754000-214758600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr1:214754000-214758600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr1:214754400-214758400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:214754400-214758600	Enhancers	HMEC	breast
7	chr1:214754400-214758600	Enhancers	Osteobl	bone
8	chr1:214754600-214758600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr1:214754600-214758600	Enhancers	HSMM	muscle
10	chr1:214755800-214757800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr1:214755800-214758200	Weak transcription	HUVEC	blood vessel
12	chr1:214755800-214758600	Enhancers	A549	lung
13	chr1:214755800-214758600	Enhancers	NHDF-Ad	bronchial
14	chr1:214755800-214758600	Enhancers	NHEK	skin
15	chr1:214755800-214761400	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr1:214756000-214758600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr1:214757200-214758400	Enhancers	Colon Smooth Muscle	Colon
18	chr1:214757200-214758600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr1:214757400-214758200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr1:214757400-214758200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr1:214757600-214758000	Weak transcription	HSMMtube	muscle
22	chr1:214757600-214758400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr1:214757600-214758400	Enhancers	NH-A	brain
24	chr1:214757600-214758600	Enhancers	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links