Variant report

Variant	rs12728827
Chromosome Location	chr1:214754983-214754984
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:214754373..214757120-chr1:214760839..214763776,3	K562	blood:
2	chr1:214723713..214727023-chr1:214751584..214755910,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152104	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12563056	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12563170	0.94[ASN][1000 genomes]
rs12563397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12563432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12565714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12737021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12758214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17735992	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1877151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34117447	0.94[ASN][1000 genomes]
rs34225982	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35134841	0.93[ASN][1000 genomes]
rs35357091	0.94[ASN][1000 genomes]
rs67168372	0.94[ASN][1000 genomes]
rs71639536	0.94[ASN][1000 genomes]
rs72759645	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214750800-214755200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:214750800-214755600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:214752800-214758400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr1:214753800-214758600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:214754000-214758600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr1:214754000-214758600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr1:214754400-214755000	Enhancers	A549	lung
8	chr1:214754400-214755400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr1:214754400-214755800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr1:214754400-214755800	Flanking Active TSS	NHEK	skin
11	chr1:214754400-214758400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr1:214754400-214758600	Enhancers	HMEC	breast
13	chr1:214754400-214758600	Enhancers	Osteobl	bone
14	chr1:214754600-214755400	Enhancers	NHDF-Ad	bronchial
15	chr1:214754600-214755800	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr1:214754600-214755800	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr1:214754600-214755800	Enhancers	HUVEC	blood vessel
18	chr1:214754600-214755800	Enhancers	NH-A	brain
19	chr1:214754600-214758600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr1:214754600-214758600	Enhancers	HSMM	muscle
21	chr1:214754800-214755800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr1:214754800-214755800	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr1:214754800-214756000	Enhancers	NHLF	lung
24	chr1:214754800-214756200	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr1:214754800-214756200	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr1:214754800-214756400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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