Variant report

Variant	rs12563432
Chromosome Location	chr1:214756410-214756411
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:214754373..214757120-chr1:214760839..214763776,3	K562	blood:
2	chr1:214556095..214557675-chr1:214755498..214757303,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11120349	0.83[CHB][hapmap];0.88[JPT][hapmap]
rs12563056	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12563170	0.92[CHB][hapmap];0.84[JPT][hapmap];0.94[ASN][1000 genomes]
rs12563397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12565714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12728827	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12737021	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.92[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12758214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17735992	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.92[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1877151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34117447	0.94[ASN][1000 genomes]
rs34225982	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35134841	0.93[ASN][1000 genomes]
rs35357091	0.94[ASN][1000 genomes]
rs67168372	0.94[ASN][1000 genomes]
rs71639536	0.94[ASN][1000 genomes]
rs72759645	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214752800-214758400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr1:214753800-214758600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:214754000-214758600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr1:214754000-214758600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr1:214754400-214758400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:214754400-214758600	Enhancers	HMEC	breast
7	chr1:214754400-214758600	Enhancers	Osteobl	bone
8	chr1:214754600-214758600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr1:214754600-214758600	Enhancers	HSMM	muscle
10	chr1:214755000-214756800	Enhancers	Colon Smooth Muscle	Colon
11	chr1:214755200-214756600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr1:214755200-214756600	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr1:214755600-214757400	Weak transcription	HSMMtube	muscle
14	chr1:214755800-214757200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr1:214755800-214757400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr1:214755800-214757600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr1:214755800-214757600	Weak transcription	NH-A	brain
18	chr1:214755800-214757800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr1:214755800-214758200	Weak transcription	HUVEC	blood vessel
20	chr1:214755800-214758600	Enhancers	A549	lung
21	chr1:214755800-214758600	Enhancers	NHDF-Ad	bronchial
22	chr1:214755800-214758600	Enhancers	NHEK	skin
23	chr1:214755800-214761400	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr1:214756000-214757600	Weak transcription	NHLF	lung
25	chr1:214756000-214758600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr1:214756200-214756800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr1:214756200-214757600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr1:214756400-214757400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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