Variant report

Variant	rs11120349
Chromosome Location	chr1:214718513-214718514
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:214716158..214720174-chr1:214722914..214726350,3	MCF-7	breast:
2	chr1:214712875..214714505-chr1:214717917..214719461,2	K562	blood:

Variant related genes	Relation type
ENSG00000152104	Chromatin interaction

rs_ID	r²[population]
rs12562411	0.83[CEU][hapmap]
rs12562873	0.89[CEU][hapmap]
rs12563170	1.00[JPT][hapmap]
rs12737021	0.83[CHB][hapmap];0.88[JPT][hapmap]
rs17735992	0.83[CHB][hapmap];0.88[JPT][hapmap]
rs34952927	0.89[CEU][hapmap]
rs4414018	0.84[CEU][hapmap]
rs57190864	0.95[ASN][1000 genomes]
rs57535424	0.94[ASN][1000 genomes]
rs58658851	0.86[ASN][1000 genomes]
rs6665967	0.89[CEU][hapmap]
rs6680964	0.84[CEU][hapmap]
rs6683647	0.84[CEU][hapmap]
rs67349118	0.86[ASN][1000 genomes]
rs67483753	0.86[ASN][1000 genomes]
rs7541263	0.82[ASN][1000 genomes]

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214699200-214722000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr1:214699200-214722400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:214701200-214719000	Weak transcription	Hela-S3	cervix
4	chr1:214702800-214718800	Weak transcription	Aorta	Aorta
5	chr1:214706600-214720000	Weak transcription	Fetal Intestine Small	intestine
6	chr1:214706600-214720600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr1:214710800-214718600	Weak transcription	Right Atrium	heart
8	chr1:214711800-214719400	Weak transcription	A549	lung
9	chr1:214712000-214719800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr1:214712000-214721200	Weak transcription	HSMMtube	muscle
11	chr1:214712200-214719800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr1:214714000-214719200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr1:214714000-214720600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr1:214714000-214720800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr1:214714000-214722400	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr1:214714000-214722400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr1:214714000-214722400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr1:214714000-214722400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr1:214714200-214719400	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr1:214714200-214720600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr1:214714400-214719400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr1:214714800-214719800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr1:214715000-214718600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr1:214715000-214718600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr1:214715200-214718800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr1:214715200-214720600	Weak transcription	NHLF	lung
27	chr1:214715600-214718600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr1:214715600-214720600	Weak transcription	Fetal Lung	lung
29	chr1:214716000-214718600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr1:214716000-214718600	Weak transcription	Stomach Mucosa	stomach
31	chr1:214716000-214719200	Weak transcription	Pancreas	Pancrea
32	chr1:214716000-214719400	Weak transcription	Esophagus	oesophagus
33	chr1:214716000-214720600	Weak transcription	Lung	lung
34	chr1:214716000-214722200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr1:214716000-214722400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr1:214716000-214722400	Weak transcription	Fetal Muscle Trunk	muscle
37	chr1:214716000-214722400	Weak transcription	Gastric	stomach
38	chr1:214716200-214718600	Weak transcription	Adipose Nuclei	Adipose
39	chr1:214716200-214718600	Weak transcription	Left Ventricle	heart
40	chr1:214716200-214718600	Weak transcription	HSMM	muscle
41	chr1:214716200-214718800	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr1:214716200-214718800	Weak transcription	Stomach Smooth Muscle	stomach
43	chr1:214716200-214719200	Weak transcription	Fetal Kidney	kidney
44	chr1:214716200-214721400	Weak transcription	Rectal Smooth Muscle	rectum
45	chr1:214716200-214722400	Weak transcription	Fetal Stomach	stomach
46	chr1:214716400-214719200	Weak transcription	Spleen	Spleen
47	chr1:214716400-214719200	Strong transcription	Osteobl	bone
48	chr1:214716400-214721200	Weak transcription	Fetal Muscle Leg	muscle
49	chr1:214716400-214721400	Weak transcription	Ovary	ovary
50	chr1:214716600-214718600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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