Variant report

Variant	rs67349118
Chromosome Location	chr1:214719856-214719857
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:214716158..214720174-chr1:214722914..214726350,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152104	Chromatin interaction

rs_ID	r²[population]
rs11120349	0.86[ASN][1000 genomes]
rs11801700	0.87[EUR][1000 genomes]
rs12091231	0.91[ASN][1000 genomes]
rs12092442	0.91[ASN][1000 genomes]
rs28565340	0.92[EUR][1000 genomes]
rs4326598	0.86[EUR][1000 genomes]
rs56253402	0.80[EUR][1000 genomes]
rs57047137	0.86[EUR][1000 genomes]
rs57190864	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57535424	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58247568	0.95[EUR][1000 genomes]
rs61443257	0.83[EUR][1000 genomes]
rs72759615	0.84[EUR][1000 genomes]
rs72759620	0.85[EUR][1000 genomes]
rs72759639	0.91[ASN][1000 genomes]
rs7541263	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214699200-214722000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr1:214699200-214722400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:214706600-214720000	Weak transcription	Fetal Intestine Small	intestine
4	chr1:214706600-214720600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr1:214712000-214721200	Weak transcription	HSMMtube	muscle
6	chr1:214714000-214720600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr1:214714000-214720800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr1:214714000-214722400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr1:214714000-214722400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:214714000-214722400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:214714000-214722400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr1:214714200-214720600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr1:214715200-214720600	Weak transcription	NHLF	lung
14	chr1:214715600-214720600	Weak transcription	Fetal Lung	lung
15	chr1:214716000-214720600	Weak transcription	Lung	lung
16	chr1:214716000-214722200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr1:214716000-214722400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr1:214716000-214722400	Weak transcription	Fetal Muscle Trunk	muscle
19	chr1:214716000-214722400	Weak transcription	Gastric	stomach
20	chr1:214716200-214721400	Weak transcription	Rectal Smooth Muscle	rectum
21	chr1:214716200-214722400	Weak transcription	Fetal Stomach	stomach
22	chr1:214716400-214721200	Weak transcription	Fetal Muscle Leg	muscle
23	chr1:214716400-214721400	Weak transcription	Ovary	ovary
24	chr1:214716600-214720200	Weak transcription	NHDF-Ad	bronchial
25	chr1:214716600-214720600	Weak transcription	Colon Smooth Muscle	Colon
26	chr1:214716600-214722200	Weak transcription	Fetal Heart	heart
27	chr1:214718200-214720400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr1:214718200-214721800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr1:214718400-214720000	Strong transcription	Muscle Satellite Cultured Cells	--
30	chr1:214718600-214720200	Enhancers	Right Atrium	heart
31	chr1:214718600-214720600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr1:214718600-214722200	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr1:214718600-214722800	Enhancers	Left Ventricle	heart
34	chr1:214718600-214723400	Enhancers	Stomach Mucosa	stomach
35	chr1:214718800-214720000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr1:214718800-214720200	Enhancers	H9 Cell Line	embryonic stem cell
37	chr1:214718800-214722400	Enhancers	HUES64 Cell Line	embryonic stem cell
38	chr1:214719000-214720000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr1:214719000-214720200	Transcr. at gene 5' and 3'	HMEC	breast
40	chr1:214719000-214720600	Enhancers	Hela-S3	cervix
41	chr1:214719000-214721200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr1:214719000-214721400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr1:214719000-214721400	Enhancers	Skeletal Muscle Male	skeletal muscle
44	chr1:214719000-214722200	Enhancers	Psoas Muscle	Psoas
45	chr1:214719200-214720600	Genic enhancers	Osteobl	bone
46	chr1:214719200-214720800	Weak transcription	Dnd41	blood
47	chr1:214719200-214721000	Enhancers	Pancreas	Pancrea
48	chr1:214719200-214721400	Enhancers	Fetal Kidney	kidney
49	chr1:214719200-214721400	Weak transcription	Stomach Smooth Muscle	stomach
50	chr1:214719200-214721600	Transcr. at gene 5' and 3'	NHEK	skin

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