Variant report

Variant	rs12562411
Chromosome Location	chr1:214690623-214690624
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11120349	0.83[CEU][hapmap]
rs12073252	0.88[CEU][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12128203	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12562873	1.00[CEU][hapmap];0.83[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12563954	0.95[ASN][1000 genomes]
rs12565246	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28523586	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34952927	1.00[CEU][hapmap];0.83[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4414018	1.00[CEU][hapmap];0.88[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59286012	0.95[ASN][1000 genomes]
rs6665807	0.95[ASN][1000 genomes]
rs6665957	0.95[ASN][1000 genomes]
rs6665967	0.93[CEU][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6680964	0.87[CEU][hapmap]
rs6683647	0.87[CEU][hapmap]
rs6685189	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6693492	0.82[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7533482	0.80[CEU][hapmap]

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214665400-214705400	Weak transcription	Right Ventricle	heart
2	chr1:214669800-214700400	Weak transcription	Aorta	Aorta
3	chr1:214686800-214693000	Enhancers	Muscle Satellite Cultured Cells	--
4	chr1:214686800-214694400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:214687600-214690800	Enhancers	Fetal Intestine Large	intestine
6	chr1:214687800-214698400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr1:214688200-214692000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr1:214688200-214693800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr1:214688400-214690800	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr1:214688400-214692000	Enhancers	NH-A	brain
11	chr1:214688400-214697800	Weak transcription	Fetal Muscle Leg	muscle
12	chr1:214688400-214698400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr1:214688400-214706200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr1:214688400-214710600	Weak transcription	Spleen	Spleen
15	chr1:214688600-214693200	Enhancers	Osteobl	bone
16	chr1:214689000-214691200	Enhancers	Fetal Intestine Small	intestine
17	chr1:214689000-214692000	Enhancers	Placenta Amnion	Placenta Amnion
18	chr1:214689000-214693000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr1:214689200-214691000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr1:214689200-214691200	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr1:214689200-214691200	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr1:214689200-214692200	Enhancers	HSMMtube	muscle
23	chr1:214689400-214691000	Enhancers	Fetal Kidney	kidney
24	chr1:214689400-214691400	Enhancers	Placenta	Placenta
25	chr1:214689400-214694200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr1:214689400-214694400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr1:214689600-214690800	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr1:214689600-214690800	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr1:214689600-214690800	Enhancers	Stomach Mucosa	stomach
30	chr1:214689600-214692800	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr1:214689800-214692600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr1:214689800-214693000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr1:214690000-214690800	Genic enhancers	NHEK	skin
34	chr1:214690000-214691400	Weak transcription	NHLF	lung
35	chr1:214690000-214693800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr1:214690000-214694000	Weak transcription	Colon Smooth Muscle	Colon
37	chr1:214690200-214691200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr1:214690200-214691600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr1:214690200-214692800	Genic enhancers	HSMM	muscle
40	chr1:214690200-214694000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr1:214690200-214697600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr1:214690400-214691200	Enhancers	Gastric	stomach
43	chr1:214690400-214692200	Weak transcription	HUVEC	blood vessel
44	chr1:214690400-214692400	Weak transcription	Small Intestine	intestine
45	chr1:214690400-214695800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr1:214690600-214691400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr1:214690600-214691800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr1:214690600-214691800	Weak transcription	HMEC	breast
49	chr1:214690600-214692400	Enhancers	A549	lung
50	chr1:214690600-214692800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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