Variant report

Variant	rs28523586
Chromosome Location	chr1:214692522-214692523
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12073252	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12128203	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12562411	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12562873	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12563954	0.93[ASN][1000 genomes]
rs12565246	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34952927	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4414018	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59286012	0.93[ASN][1000 genomes]
rs6665807	0.93[ASN][1000 genomes]
rs6665957	0.93[ASN][1000 genomes]
rs6665967	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6685189	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6693492	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214665400-214705400	Weak transcription	Right Ventricle	heart
2	chr1:214669800-214700400	Weak transcription	Aorta	Aorta
3	chr1:214686800-214693000	Enhancers	Muscle Satellite Cultured Cells	--
4	chr1:214686800-214694400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:214687800-214698400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr1:214688200-214693800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr1:214688400-214697800	Weak transcription	Fetal Muscle Leg	muscle
8	chr1:214688400-214698400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr1:214688400-214706200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr1:214688400-214710600	Weak transcription	Spleen	Spleen
11	chr1:214688600-214693200	Enhancers	Osteobl	bone
12	chr1:214689000-214693000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr1:214689400-214694200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr1:214689400-214694400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr1:214689600-214692800	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr1:214689800-214692600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr1:214689800-214693000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr1:214690000-214693800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr1:214690000-214694000	Weak transcription	Colon Smooth Muscle	Colon
20	chr1:214690200-214692800	Genic enhancers	HSMM	muscle
21	chr1:214690200-214694000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr1:214690200-214697600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr1:214690400-214695800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr1:214690600-214692800	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr1:214690600-214693200	Weak transcription	Fetal Heart	heart
26	chr1:214690600-214693800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr1:214690600-214694200	Weak transcription	Psoas Muscle	Psoas
28	chr1:214690600-214694600	Enhancers	NHDF-Ad	bronchial
29	chr1:214690600-214694800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr1:214690600-214696400	Weak transcription	Left Ventricle	heart
31	chr1:214690600-214697000	Weak transcription	Lung	lung
32	chr1:214690600-214697800	Weak transcription	Adipose Nuclei	Adipose
33	chr1:214690600-214697800	Weak transcription	Rectal Smooth Muscle	rectum
34	chr1:214690600-214697800	Weak transcription	Right Atrium	heart
35	chr1:214690600-214698400	Weak transcription	Esophagus	oesophagus
36	chr1:214690600-214705600	Weak transcription	Ovary	ovary
37	chr1:214690600-214705600	Weak transcription	Pancreas	Pancrea
38	chr1:214690800-214692800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr1:214690800-214693200	Enhancers	NHEK	skin
40	chr1:214690800-214693800	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr1:214690800-214693800	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr1:214690800-214698200	Weak transcription	Stomach Mucosa	stomach
43	chr1:214691000-214693600	Weak transcription	Fetal Kidney	kidney
44	chr1:214691000-214695800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr1:214691200-214693800	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr1:214691200-214696200	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr1:214691400-214692800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr1:214691400-214692800	Enhancers	NHLF	lung
49	chr1:214691400-214705600	Weak transcription	Placenta	Placenta
50	chr1:214692000-214694000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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