Variant report

Variant	rs12128203
Chromosome Location	chr1:214701099-214701100
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:214700930-214701168	PANC-1	pancreas:	n/a	n/a
2	MAX	chr1:214701011-214701123	NB4	blood:	n/a	chr1:214701058-214701068

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:214677154..214678655-chr1:214700789..214703552,2	MCF-7	breast:

Variant related genes	Relation type
KRT18P12	TF binding region

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12073252	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12562411	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12562873	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12563954	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12565246	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28523586	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34952927	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4375231	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4414018	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58658851	0.85[AMR][1000 genomes]
rs59286012	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6665807	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6665957	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6665967	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6685189	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6693492	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67483753	0.84[AMR][1000 genomes]

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214665400-214705400	Weak transcription	Right Ventricle	heart
2	chr1:214688400-214706200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:214688400-214710600	Weak transcription	Spleen	Spleen
4	chr1:214690600-214705600	Weak transcription	Ovary	ovary
5	chr1:214690600-214705600	Weak transcription	Pancreas	Pancrea
6	chr1:214691400-214705600	Weak transcription	Placenta	Placenta
7	chr1:214692400-214710600	Weak transcription	HUVEC	blood vessel
8	chr1:214694400-214706400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:214694600-214705400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr1:214697000-214701200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr1:214697200-214701400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr1:214697400-214702400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:214697600-214701200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr1:214697600-214701200	Enhancers	NH-A	brain
15	chr1:214697800-214701400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr1:214697800-214706000	Weak transcription	Lung	lung
17	chr1:214698000-214704800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr1:214698400-214701400	Enhancers	NHDF-Ad	bronchial
19	chr1:214698800-214701200	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr1:214698800-214710800	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr1:214699000-214705400	Weak transcription	Fetal Intestine Small	intestine
22	chr1:214699200-214701200	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr1:214699200-214702400	Weak transcription	Primary T cells from cord blood	blood
24	chr1:214699200-214702600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr1:214699200-214702600	Enhancers	Osteobl	bone
26	chr1:214699200-214704600	Weak transcription	Rectal Smooth Muscle	rectum
27	chr1:214699200-214705600	Weak transcription	Gastric	stomach
28	chr1:214699200-214706200	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr1:214699200-214706200	Weak transcription	Esophagus	oesophagus
30	chr1:214699200-214711400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr1:214699200-214711600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr1:214699200-214722000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr1:214699200-214722400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr1:214699400-214702600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr1:214699400-214704600	Weak transcription	Fetal Kidney	kidney
36	chr1:214699400-214704800	Weak transcription	Fetal Muscle Leg	muscle
37	chr1:214699400-214705400	Weak transcription	Fetal Stomach	stomach
38	chr1:214699400-214706000	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr1:214699600-214702600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr1:214699600-214704800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr1:214699600-214705400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr1:214699600-214705400	Weak transcription	Fetal Muscle Trunk	muscle
43	chr1:214699800-214701400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr1:214699800-214715200	Weak transcription	Stomach Mucosa	stomach
45	chr1:214700000-214704600	Weak transcription	Colon Smooth Muscle	Colon
46	chr1:214700000-214704600	Weak transcription	HSMM	muscle
47	chr1:214700000-214704800	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr1:214700000-214705400	Weak transcription	NHLF	lung
49	chr1:214700000-214706000	Weak transcription	Stomach Smooth Muscle	stomach
50	chr1:214700200-214702600	Weak transcription	HMEC	breast

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