Variant report

Variant	rs12091579
Chromosome Location	chr1:77697013-77697014
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1010195	0.91[CHB][hapmap];0.84[CHD][hapmap];0.89[GIH][hapmap];0.83[TSI][hapmap]
rs10493604	0.86[CHB][hapmap];0.84[CHD][hapmap];0.86[GIH][hapmap];0.83[TSI][hapmap]
rs12095740	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12407610	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1377735	0.86[CHB][hapmap]
rs1592340	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17100308	0.95[CHB][hapmap];0.84[JPT][hapmap]
rs2272161	0.84[ASN][1000 genomes]
rs2815321	0.89[ASN][1000 genomes]
rs2815322	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3921995	0.83[ASN][1000 genomes]
rs4949781	0.80[ASN][1000 genomes]
rs72641172	0.81[ASN][1000 genomes]
rs940283	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9787070	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006887	chr1:77566348-77698128	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:77686000-77699200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr1:77686600-77698200	Weak transcription	Brain Angular Gyrus	brain
3	chr1:77686800-77698000	Weak transcription	HUVEC	blood vessel
4	chr1:77688400-77697600	Weak transcription	Primary T cells from cord blood	blood
5	chr1:77693800-77697600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr1:77696400-77698200	Weak transcription	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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