Variant report

Variant	rs1592340
Chromosome Location	chr1:77719729-77719730
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1010195	0.89[CHB][hapmap]
rs10493604	0.84[CHB][hapmap]
rs12091579	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12095740	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12407610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1377735	0.85[CHB][hapmap]
rs17100308	0.95[CHB][hapmap];0.84[JPT][hapmap]
rs2272161	0.86[ASN][1000 genomes]
rs2815321	0.92[ASN][1000 genomes]
rs2815322	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34422174	0.81[ASN][1000 genomes]
rs3921995	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72641172	0.84[ASN][1000 genomes]
rs940283	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9787070	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432398	chr1:77707391-77740836	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:77719600-77719800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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